Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 0.0e+00 2011.5 1050 100.0
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 3.2e-201 706.4 1101 42.7
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.6e-195 686.8 1106 43.4
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.6e-192 677.6 1111 42.3
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.3e-178 631.3 1084 40.5
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 8.4e-178 628.6 1087 41.3
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 7.1e-177 625.5 1108 41.4
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 5.7e-174 615.9 1107 39.7
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 3.1e-172 610.1 1110 39.5
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 4.0e-172 609.8 1057 39.5
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 5.3e-172 609.4 1103 41.3
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 5.3e-172 609.4 1104 41.0
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 1.8e-159 567.8 1105 38.0
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 6.9e-156 555.8 1082 40.0
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 4.5e-155 553.1 1107 38.1
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 7.2e-153 545.8 1107 37.2
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 4.4e-150 536.6 1111 38.1
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 2.8e-149 533.9 1105 37.0
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.8e-148 531.2 1093 37.3
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.8e-148 531.2 1055 37.3
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 3.2e-145 520.4 1107 37.6
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 4.7e-144 516.5 1115 37.6
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 6.1e-144 516.2 1116 37.5
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 6.1e-144 516.2 1098 37.3
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 8.8e-143 512.3 1103 36.0
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.7e-141 508.1 1100 35.6
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.2e-138 497.7 1103 34.7
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 5.5e-137 493.0 1055 36.5
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 6.8e-135 486.1 1100 35.4
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 4.4e-134 483.4 1093 36.4
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 7.5e-134 482.6 1143 35.2
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.7e-133 481.5 1014 37.0
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 2.4e-132 477.6 1112 36.6
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 2.9e-130 470.7 1109 36.0
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 3.8e-130 470.3 1089 36.1
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 3.8e-130 470.3 1094 35.5
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 8.5e-130 469.2 1073 35.1
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 9.4e-129 465.7 1058 36.1
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 7.5e-126 456.1 950 38.1
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 1.0e-122 445.7 1113 34.4
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 1.2e-120 438.7 1077 35.4
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 4.7e-120 436.8 1118 34.4
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 5.2e-119 433.3 1128 34.2
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 7.5e-118 429.5 1131 34.2
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 4.9e-117 426.8 1063 33.5
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 6.4e-117 426.4 1084 35.1
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.1e-116 425.6 1084 33.9
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 3.2e-116 424.1 1097 33.8
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 9.2e-116 422.5 1069 34.1
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 6.6e-114 416.4 1068 33.5
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.6e-110 404.4 891 37.0
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 2.2e-109 401.4 1088 32.9
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 1.3e-106 392.1 1086 33.7
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 1.7e-106 391.7 1058 32.2
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.8e-104 384.4 1074 34.8
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 2.8e-104 384.4 1078 34.0
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 2.3e-103 381.3 1089 33.4
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.1e-103 380.9 1079 34.3
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 1.3e-101 375.6 1097 32.7
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 5.4e-100 370.2 1140 32.4
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.1e-99 368.2 1092 30.8
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.9e-98 364.0 1123 32.3
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.2e-96 359.0 1055 31.8
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 1.2e-96 359.0 1076 32.2
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 4.0e-95 354.0 1094 31.2
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 5.2e-95 353.6 1082 32.3
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 1.2e-94 352.4 1059 31.8
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.1e-92 345.9 1082 31.8
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 4.1e-92 344.0 1080 31.3
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 4.1e-92 344.0 1118 30.4
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 5.6e-89 333.6 1079 31.3
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 1.6e-88 332.0 1079 31.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.6e-88 330.9 1060 31.4
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 2.9e-85 321.2 1055 29.5
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 7.8e-83 313.2 1083 29.8
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 9.6e-81 306.2 1068 30.5
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 1.3e-80 305.8 459 45.3
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.5e-78 298.9 843 32.7
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 5.8e-78 297.0 1061 29.6
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 7.6e-78 296.6 682 35.0
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 2.2e-77 295.0 933 29.7
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 3.8e-77 294.3 1063 29.7
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 3.8e-77 294.3 1062 29.7
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.4e-77 293.1 1035 31.6
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 1.1e-76 292.7 1055 29.9
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 4.2e-76 290.8 1063 31.3
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 6.0e-75 287.0 1106 28.2
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 7.9e-75 286.6 1056 29.7
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 5.1e-74 283.9 1064 29.2
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 1.5e-73 282.3 1062 28.9
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 2.5e-73 281.6 1055 27.7
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 9.6e-73 279.6 1065 30.2
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.8e-72 278.1 1071 29.4
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 8.4e-69 266.5 1061 28.7
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 8.7e-66 256.5 1081 28.2
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 4.3e-65 254.2 1056 29.0
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 1.9e-60 238.8 844 32.0
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 7.1e-60 236.9 1059 27.1
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.1e-59 235.3 979 29.1
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 2.5e-57 228.4 1250 27.5
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 7.9e-51 206.8 1044 27.0
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 1.3e-50 206.1 365 39.5
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 5.1e-50 204.1 218 48.6
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 1.3e-48 199.5 809 29.5
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 2.5e-44 185.3 1025 26.2
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 1.5e-41 176.0 185 48.6
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.8e-40 171.8 291 38.5
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 1.8e-34 152.5 663 28.1
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 4.7e-27 127.9 1092 24.2
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 8.0e-27 127.1 130 49.2
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 2.8e-24 118.6 1103 24.1
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 5.3e-23 114.4 185 35.7
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.8e-18 99.4 918 23.7
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 4.1e-15 88.2 540 29.8
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 4.5e-14 84.7 228 31.6
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 6.5e-13 80.9 241 30.3
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 8.5e-13 80.5 222 32.0
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.9e-12 79.3 221 29.9
SEGI_09114 Sequoiadendron giganteum HOM05D006788 ORTHO05D008265 1.9e-12 79.3 968 23.9
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 2.7e-11 75.5 221 30.3
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 2.7e-11 75.5 108 44.4
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.6e-11 75.1 108 44.4
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 6.1e-11 74.3 165 30.3
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 8.0e-11 73.9 224 30.8
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.0e-10 73.6 902 23.1
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 1.4e-10 73.2 284 30.3
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 1.4e-10 73.2 71 46.5
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 4.0e-10 71.6 169 30.8
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 4.0e-10 71.6 237 29.5
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.2e-10 71.2 940 22.4
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 5.2e-10 71.2 901 23.8
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 6.8e-10 70.9 146 34.9
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.5e-09 69.7 173 30.1
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.5e-09 69.7 185 27.6
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 1.5e-09 69.7 174 29.3
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 3.4e-09 68.6 246 29.3
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 4.4e-09 68.2 919 21.9
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 7.5e-09 67.4 120 37.5
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 1.7e-08 66.2 113 38.1
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 2.2e-08 65.9 941 22.7
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 2.2e-08 65.9 908 21.7
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.2e-08 65.9 916 22.9
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 2.8e-08 65.5 213 28.2
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 4.9e-08 64.7 229 28.8
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 4.9e-08 64.7 194 24.2
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 8.3e-08 63.9 936 22.0
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 8.3e-08 63.9 198 25.3
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.1e-07 63.5 281 25.6
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.1e-07 63.5 218 28.9
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.1e-07 63.5 213 27.7
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 4.1e-07 61.6 220 28.6
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 4.1e-07 61.6 918 22.5
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 4.1e-07 61.6 226 29.6
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.4e-07 61.2 915 22.0
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.4e-07 61.2 913 22.5
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 7.0e-07 60.8 963 21.8
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.2e-06 60.1 919 20.7
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 1.6e-06 59.7 905 21.2
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.0e-06 59.3 884 20.9
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 2.0e-06 59.3 356 23.9
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 2.0e-06 59.3 172 29.7
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.7e-06 58.9 884 20.7
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 3.5e-06 58.5 204 23.0
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 4.5e-06 58.2 390 23.8
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 4.5e-06 58.2 928 21.7
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 4.5e-06 58.2 918 23.0
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 5.9e-06 57.8 889 20.2


User provided reference genes

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