Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 0.0e+00 1189.9 674 100.0
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 4.9e-147 525.8 621 57.6
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 1.4e-130 471.1 519 61.5
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 5.9e-124 449.1 439 68.8
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 2.2e-123 447.2 500 61.8
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 5.0e-123 446.0 516 60.7
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 7.2e-122 442.2 513 60.2
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 2.7e-121 440.3 517 57.6
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 1.0e-120 438.3 542 58.3
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 2.6e-119 433.7 445 64.9
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 4.8e-118 429.5 609 53.5
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 2.0e-116 424.1 617 51.4
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 2.9e-115 420.2 534 56.4
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 6.5e-115 419.1 588 51.2
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 7.2e-114 415.6 444 64.0
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 9.4e-114 415.2 494 60.7
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.6e-113 414.5 445 63.1
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 2.1e-113 414.1 513 59.8
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 1.8e-112 411.0 444 63.1
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 2.3e-112 410.6 482 55.2
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 8.8e-112 408.7 445 62.5
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 8.8e-112 408.7 450 64.2
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.3e-110 404.8 444 62.4
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 1.7e-110 404.4 495 59.0
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.7e-110 404.4 474 60.8
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.8e-110 403.7 450 63.3
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 3.7e-110 403.3 485 59.8
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 3.1e-109 400.2 450 63.3
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 2.0e-108 397.5 533 50.8
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 2.6e-108 397.1 444 62.2
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 2.6e-108 397.1 446 63.0
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 3.8e-107 393.3 524 56.7
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.1e-106 391.7 443 63.4
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 4.7e-105 386.3 507 57.4
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 6.1e-105 386.0 466 59.7
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 3.0e-104 383.6 485 56.7
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 3.0e-104 383.6 441 60.1
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 2.6e-103 380.6 535 53.6
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 3.4e-103 380.2 442 62.4
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 5.7e-103 379.4 381 69.6
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.7e-102 377.9 474 58.4
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 1.7e-102 377.9 387 69.3
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 2.8e-102 377.1 489 55.2
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 2.8e-102 377.1 440 59.8
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 1.1e-101 375.2 455 58.2
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 1.1e-101 375.2 575 51.1
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 1.4e-101 374.8 456 58.6
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 1.4e-101 374.8 513 54.8
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 4.1e-101 373.2 503 54.7
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 9.1e-101 372.1 500 56.0
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 7.7e-100 369.0 439 59.2
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 1.3e-99 368.2 517 55.5
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 8.5e-99 365.5 441 59.2
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 7.2e-98 362.5 441 58.7
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 4.0e-96 356.7 442 58.8
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 3.4e-95 353.6 450 55.3
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 7.5e-95 352.4 438 57.1
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 7.0e-93 345.9 444 56.8
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 9.1e-93 345.5 505 52.5
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 4.5e-92 343.2 431 58.0
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 1.3e-91 341.7 443 59.4
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 2.3e-91 340.9 510 53.3
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 8.6e-91 339.0 497 54.7
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 7.2e-90 335.9 439 54.2
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 9.5e-90 335.5 524 52.1
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 1.0e-88 332.0 477 51.4
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 5.2e-88 329.7 437 56.3
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 6.8e-88 329.3 476 50.2
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.2e-87 328.6 441 57.1
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 3.4e-87 327.0 480 50.4
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 7.5e-87 325.9 439 56.7
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 8.3e-86 322.4 404 58.9
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 2.0e-84 317.8 436 56.2
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 2.3e-83 314.3 490 50.0
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 1.5e-82 311.6 453 53.9
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 5.6e-82 309.7 514 49.4
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 1.4e-80 305.1 438 39.5
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 1.4e-80 305.1 620 45.3
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 5.2e-80 303.1 464 53.2
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 7.5e-79 299.3 441 51.7
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 2.2e-78 297.7 384 42.4
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 2.2e-78 297.7 384 42.4
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 2.2e-78 297.7 508 50.2
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 1.9e-77 294.7 452 52.2
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 5.4e-77 293.1 524 49.6
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 6.0e-76 289.7 484 48.8
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 1.3e-75 288.5 452 52.0
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 3.9e-75 287.0 415 54.9
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 6.6e-75 286.2 484 48.6
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 1.2e-73 282.0 386 58.5
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 3.7e-70 270.4 484 45.5
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 1.6e-68 265.0 451 50.8
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 1.9e-61 241.5 443 49.2
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 1.8e-56 224.9 434 49.5
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 3.1e-56 224.2 500 42.4
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 4.0e-56 223.8 504 42.3
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 8.4e-54 216.1 201 53.2
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 2.1e-52 211.5 390 49.2
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 3.5e-52 210.7 193 53.4
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 3.3e-50 204.1 201 51.2
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 9.6e-50 202.6 357 35.0
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 9.6e-50 202.6 357 35.0
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 2.5e-34 151.4 318 31.4
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 5.7e-26 123.6 106 57.5
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 9.1e-08 63.2 113 31.9
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 9.1e-08 63.2 113 31.9
BcaB02g10696 Brassica carinata HOM05D000001 ORTHO05D009806 1.2e-07 62.8 154 27.3
CARHR156170 Cardamine hirsuta HOM05D000001 ORTHO05D009806 4.5e-07 60.8 153 26.8
Phvul.001G059500 Phaseolus vulgaris HOM05D007251 ORTHO05D009266 1.0e-06 59.7 201 25.4
VMungo0647G2138 Vigna mungo HOM05D007251 ORTHO05D009266 1.0e-06 59.7 201 25.9
Haze_21751 Corylus avellana HOM05D007251 ORTHO05D009266 1.3e-06 59.3 198 25.8
CiPaw.10G023600 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.7e-06 58.9 468 19.4
Prupe.3G245900 Prunus persica HOM05D000001 ORTHO05D000003 1.7e-06 58.9 203 23.2
Carub.0005s1362 Capsella rubella HOM05D000001 ORTHO05D009806 2.2e-06 58.5 153 26.8
Psat6g032880 Pisum sativum HOM05D007251 ORTHO05D009266 2.2e-06 58.5 198 25.3
Dinv35320 Davidia involucrata HOM05D000001 ORTHO05D000003 2.9e-06 58.2 119 29.4
MBI08_g42591_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 2.9e-06 58.2 177 27.7
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 3.8e-06 57.8 143 25.2
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 3.8e-06 57.8 143 25.2
FAN09G2532 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.8e-06 57.8 179 24.6
Lj3g0017889 Lotus japonicus HOM05D000001 ORTHO05D010372 5.0e-06 57.4 157 24.8
Oeu041338.1 Olea europaea HOM05D000001 ORTHO05D000003 6.5e-06 57.0 138 29.0
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 8.5e-06 56.6 131 26.0
PGR142G3618 Punica granatum HOM05D000001 ORTHO05D000003 8.5e-06 56.6 214 23.8


User provided reference genes

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