Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 7.1e-159 563.9 292 100.0
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 2.0e-68 263.5 364 43.7
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 4.7e-62 242.3 308 45.5
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 2.3e-61 240.0 310 45.5
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 9.8e-60 234.6 337 41.2
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 9.8e-60 234.6 335 40.9
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.3e-59 234.2 337 40.9
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 2.7e-57 226.5 298 43.6
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 4.6e-57 225.7 334 39.2
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 1.7e-56 223.8 329 38.9
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 3.9e-56 222.6 334 38.3
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 3.3e-55 219.5 361 40.4
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 1.4e-53 214.2 352 40.1
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 1.5e-52 210.7 311 43.4
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 4.4e-52 209.1 314 40.1
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 5.8e-52 208.8 314 40.4
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.3e-51 207.6 308 42.5
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 6.4e-51 205.3 328 38.1
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 1.4e-50 204.1 233 48.5
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 7.1e-50 201.8 387 35.9
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 1.2e-49 201.1 297 41.1
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 1.6e-49 200.7 325 38.8
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 2.7e-49 199.9 369 36.3
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 4.6e-49 199.1 290 42.1
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 3.0e-48 196.4 309 39.8
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 3.0e-48 196.4 293 41.6
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.9e-48 196.1 314 42.0
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 3.9e-48 196.1 314 42.0
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 5.1e-48 195.7 301 39.2
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 6.6e-48 195.3 289 41.9
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 1.5e-47 194.1 288 41.7
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 1.9e-47 193.7 327 38.2
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.5e-47 193.4 314 41.4
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.6e-46 190.7 307 38.4
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 2.1e-46 190.3 312 39.1
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 3.6e-46 189.5 312 39.1
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 3.6e-46 189.5 299 40.5
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 6.2e-46 188.7 291 38.5
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.4e-45 187.6 294 38.1
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 1.8e-45 187.2 337 36.8
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 5.2e-45 185.7 314 39.8
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.2e-44 184.5 290 36.9
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.4e-42 177.6 308 38.3
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 1.4e-42 177.6 305 38.7
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 1.9e-42 177.2 289 39.1
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 3.2e-42 176.4 289 38.1
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 5.4e-42 175.6 308 38.3
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.2e-41 174.5 356 34.3
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.6e-41 174.1 272 37.5
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 3.5e-41 172.9 348 35.6
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 3.5e-41 172.9 301 37.2
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 4.6e-41 172.6 289 37.4
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.3e-40 171.0 298 37.6
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 3.9e-40 169.5 323 37.2
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 5.1e-40 169.1 344 32.6
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 6.6e-40 168.7 272 36.0
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 7.3e-39 165.2 307 37.1
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 3.4e-36 156.4 337 35.6
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 1.4e-34 151.0 323 33.1
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.0e-32 144.8 267 37.5
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 1.3e-32 144.4 289 35.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 2.3e-32 143.7 341 30.5
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.0e-32 143.3 368 29.9
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 6.7e-32 142.1 117 59.8
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 2.8e-30 136.7 309 31.4
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 3.7e-30 136.3 188 42.6
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 8.1e-30 135.2 294 32.7
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 5.3e-29 132.5 142 50.7
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 3.4e-28 129.8 293 32.8
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 2.1e-25 120.6 225 36.9
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 2.7e-25 120.2 277 31.0
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.0e-24 118.2 276 30.4
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.0e-24 118.2 276 30.4
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 1.3e-24 117.9 285 29.8
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 1.8e-24 117.5 103 56.3
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 3.9e-24 116.3 276 30.1
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 2.5e-23 113.6 277 30.0
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 3.3e-23 113.2 199 37.7
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 4.3e-23 112.8 126 46.8
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 5.6e-23 112.5 277 29.6
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 1.6e-22 110.9 286 30.1
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 6.9e-21 105.5 102 52.9
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 7.6e-20 102.1 172 37.8
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 1.3e-19 101.3 208 33.2
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.3e-19 101.3 277 27.4
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 5.5e-18 95.9 71 64.8
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 7.1e-18 95.5 247 29.1
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 7.1e-18 95.5 211 31.8
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 1.2e-17 94.7 120 41.7
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.2e-17 94.7 252 29.8
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 1.6e-17 94.4 211 31.3
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 2.1e-17 94.0 166 37.3
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 1.8e-16 90.9 133 38.3
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 2.3e-16 90.5 198 31.3
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 3.0e-16 90.1 202 33.7
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 3.9e-16 89.7 275 28.0
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 8.7e-16 88.6 200 31.0
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 8.7e-16 88.6 202 33.7
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 2.5e-15 87.0 165 35.8
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.5e-15 87.0 205 32.2
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 5.7e-15 85.9 211 32.2
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 9.7e-15 85.1 232 29.3
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.3e-14 84.7 95 46.3
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 2.1e-14 84.0 202 32.7
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 4.8e-14 82.8 202 32.7
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 4.8e-14 82.8 246 28.0
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 1.8e-13 80.9 202 33.7
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 3.1e-13 80.1 202 33.2
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 7.6e-12 75.5 220 29.1
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 1.7e-11 74.3 122 36.9
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 5.0e-11 72.8 136 35.3
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 8.5e-11 72.0 79 53.2
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 1.4e-10 71.2 141 29.8
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 7.2e-10 68.9 121 35.5
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 7.2e-10 68.9 150 34.0
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 9.3e-10 68.6 166 28.9
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 1.2e-09 68.2 101 38.6
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.6e-09 67.8 121 35.5
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 4.6e-09 66.2 63 57.1
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 4.6e-09 66.2 121 34.7
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 7.9e-09 65.5 63 57.1
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 7.9e-09 65.5 94 31.9
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 2.3e-08 63.9 116 35.3
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 5.1e-08 62.8 167 32.3
MELO3C002885.2 Cucumis melo HOM05D000336 ORTHO05D002705 1.1e-07 61.6 148 26.4
CsaV3_5G025830 Cucumis sativus L. HOM05D000336 ORTHO05D002705 1.1e-07 61.6 148 26.4
ClCG09G020540 Citrullus lanatus HOM05D000336 ORTHO05D002705 1.5e-07 61.2 148 25.7
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.5e-07 61.2 131 29.0
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 1.5e-07 61.2 98 32.7
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 1.9e-07 60.8 103 28.2
Medtr8g070660 Medicago truncatula HOM05D000336 ORTHO05D002705 2.5e-07 60.5 97 29.9
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 3.3e-07 60.1 103 29.1
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 3.3e-07 60.1 97 33.0
Manes.07G103100 Manihot esculenta HOM05D000336 ORTHO05D002705 5.7e-07 59.3 118 26.3
Aqoxy2G01232 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 7.4e-07 58.9 124 24.2
TAR636G0998 Trochodendron aralioides HOM05D000336 ORTHO05D002705 7.4e-07 58.9 148 27.7
Lj2g0014987 Lotus japonicus HOM05D000336 ORTHO05D002705 9.7e-07 58.5 76 32.9
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 9.7e-07 58.5 116 31.0
CiPaw.01G275200 Carya illinoinensis HOM05D000336 ORTHO05D002705 1.3e-06 58.2 96 29.2
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.3e-06 58.2 66 40.9
Phvul.004G074600 Phaseolus vulgaris HOM05D000336 ORTHO05D002705 1.6e-06 57.8 97 28.9
Potri.010G219200 Populus trichocarpa HOM05D000336 ORTHO05D002705 1.6e-06 57.8 99 29.3
Sc05g0003330 Simmondsia chinensis HOM05D000336 ORTHO05D002705 1.6e-06 57.8 96 31.2
Solyc02g091660.3 Solanum lycopersicum HOM05D000336 ORTHO05D000593 1.6e-06 57.8 65 44.6
Sopen02g036270 Solanum pennellii HOM05D000336 ORTHO05D000593 1.6e-06 57.8 65 44.6
CDE02G1362 Ceratophyllum demersum HOM05D000336 ORTHO05D002705 2.2e-06 57.4 99 32.3
MD01G1111300 Malus domestica HOM05D000336 ORTHO05D002705 2.2e-06 57.4 89 29.2
TWI60G1326 Tripterygium wilfordii HOM05D000336 ORTHO05D002705 2.8e-06 57.0 103 27.2
VMungo0464G0405 Vigna mungo HOM05D000336 ORTHO05D002705 2.8e-06 57.0 97 29.9
FAN10G2878 Fragaria x ananassa HOM05D000336 ORTHO05D002705 3.7e-06 56.6 97 27.8
Mapoly0042s0064 Marchantia polymorpha HOM05D000336 ORTHO05D000593 3.7e-06 56.6 70 41.4
Medtr6g033375 Medicago truncatula HOM05D000336 ORTHO05D002705 3.7e-06 56.6 96 29.2
RcHm_v2.0_Chr1g0363941 Rosa chinensis HOM05D000336 ORTHO05D002705 3.7e-06 56.6 97 27.8
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 4.8e-06 56.2 106 33.0
SGA_v2.0_scaffold341G49354 Striga asiatica HOM05D000336 ORTHO05D002705 4.8e-06 56.2 86 29.1
Aqoxy4G03225 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 6.3e-06 55.8 103 25.2
arahy.Tifrunner.gnm1.ann1.90FR5C Arachis hypogaea HOM05D000336 ORTHO05D002705 6.3e-06 55.8 97 28.9
arahy.Tifrunner.gnm1.ann1.AFBY4F Arachis hypogaea HOM05D000336 ORTHO05D002705 6.3e-06 55.8 97 28.9
Lsat_1_v5_gn_1_75080 Lactuca sativa HOM05D000336 ORTHO05D002705 6.3e-06 55.8 130 25.4
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 6.3e-06 55.8 132 30.3
AUR62006446 Chenopodium quinoa HOM05D000336 ORTHO05D002705 8.2e-06 55.5 118 28.8
Prupe.2G216800 Prunus persica HOM05D000336 ORTHO05D002705 8.2e-06 55.5 97 25.8
Zm00001eb270110 Zea mays HOM05D000336 ORTHO05D002705 8.2e-06 55.5 79 34.2


User provided reference genes

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