Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 1.8e-199 699.1 381 100.0
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.1e-131 473.0 306 83.3
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.2e-129 467.2 310 81.6
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 1.1e-127 460.7 306 81.0
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 1.1e-127 460.7 306 81.0
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 1.4e-127 460.3 305 81.6
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 5.5e-127 458.4 304 79.3
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 1.6e-126 456.8 303 81.8
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.6e-126 456.8 306 80.4
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 2.1e-126 456.4 310 81.3
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.6e-126 455.3 308 78.2
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 7.9e-126 454.5 321 79.8
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 3.0e-125 452.6 308 77.3
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 5.1e-125 451.8 303 79.2
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 6.7e-125 451.4 304 79.6
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 1.1e-124 450.7 304 79.6
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 5.7e-124 448.4 349 72.2
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 7.4e-124 448.0 304 77.6
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 1.6e-123 446.8 304 77.6
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.6e-123 446.8 297 79.5
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.2e-123 446.4 304 77.3
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 2.2e-123 446.4 304 78.3
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 2.2e-123 446.4 304 78.0
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 4.8e-123 445.3 281 83.3
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 8.2e-123 444.5 305 78.0
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 8.2e-123 444.5 304 78.6
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.1e-122 444.1 304 77.0
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 1.8e-122 443.4 305 77.4
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 2.4e-122 443.0 304 77.3
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 4.1e-122 442.2 304 76.6
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.1e-122 442.2 305 77.0
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.1e-122 442.2 305 77.0
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 9.0e-122 441.0 309 76.7
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 2.6e-121 439.5 305 76.7
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 3.4e-121 439.1 309 76.7
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 4.5e-121 438.7 296 78.0
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 5.9e-121 438.3 305 76.4
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.7e-120 436.8 308 75.0
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 2.9e-120 436.0 290 79.0
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 2.9e-120 436.0 290 79.0
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 8.5e-120 434.5 304 77.0
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 4.2e-119 432.2 304 75.7
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 7.2e-119 431.4 303 75.6
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 9.4e-119 431.0 300 77.0
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 2.7e-118 429.5 304 75.0
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.4e-117 427.2 304 73.4
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 8.8e-117 424.5 304 75.0
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 8.8e-117 424.5 304 73.7
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 3.3e-116 422.5 298 75.5
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 3.3e-116 422.5 304 74.0
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 1.3e-115 420.6 283 77.4
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 2.2e-115 419.9 296 76.0
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 1.1e-114 417.5 283 78.4
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.4e-114 417.2 304 73.4
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.3e-114 415.2 263 81.4
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 9.1e-114 414.5 294 74.5
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 1.2e-113 414.1 294 74.1
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-113 414.1 265 80.8
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 1.5e-113 413.7 283 76.0
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.5e-113 413.7 294 74.5
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.5e-113 413.7 264 80.7
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 3.4e-113 412.5 304 73.7
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 3.4e-113 412.5 281 77.2
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 3.4e-113 412.5 303 73.3
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 3.4e-113 412.5 304 71.7
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 7.7e-113 411.4 289 74.7
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.7e-113 411.4 263 80.6
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 1.3e-112 410.6 284 76.8
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 1.3e-112 410.6 283 76.7
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 1.7e-112 410.2 283 75.6
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 1.7e-112 410.2 289 75.1
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 2.2e-112 409.8 290 74.8
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 2.9e-112 409.5 304 73.0
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 2.9e-112 409.5 298 73.2
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 2.9e-112 409.5 304 71.4
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 3.8e-112 409.1 298 73.2
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 5.0e-112 408.7 304 73.0
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 5.0e-112 408.7 305 73.4
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 8.5e-112 407.9 283 75.3
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 1.1e-111 407.5 285 74.7
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.5e-111 406.4 291 74.9
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 3.2e-111 406.0 281 76.5
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 4.2e-111 405.6 290 74.5
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 4.2e-111 405.6 283 74.9
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 7.2e-111 404.8 304 73.4
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 9.4e-111 404.4 284 75.4
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.2e-110 404.1 287 74.2
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 1.2e-110 404.1 333 67.3
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.2e-110 404.1 304 70.4
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 2.7e-110 402.9 280 74.6
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 6.1e-110 401.7 274 76.3
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 6.1e-110 401.7 274 75.9
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 7.9e-110 401.4 287 71.8
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 1.4e-109 400.6 320 67.8
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 2.3e-109 399.8 281 74.0
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 2.3e-109 399.8 297 72.4
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 2.3e-109 399.8 280 73.9
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.0e-109 399.4 288 74.0
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 3.0e-109 399.4 281 74.0
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 3.9e-109 399.1 274 75.9
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 8.8e-109 397.9 289 72.7
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 8.8e-109 397.9 289 72.7
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.5e-108 397.1 264 79.5
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 5.7e-108 395.2 301 70.4
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 7.4e-108 394.8 289 72.3
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 1.3e-107 394.0 319 67.7
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 1.3e-107 394.0 294 71.8
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.7e-107 393.7 282 74.5
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 3.7e-107 392.5 289 72.0
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 3.7e-107 392.5 304 73.7
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.3e-107 391.7 310 72.3
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.1e-106 391.0 304 73.7
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 2.2e-104 383.3 306 71.6
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 2.2e-104 383.3 298 68.1
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.5e-103 379.8 263 77.6
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.6e-102 377.1 304 66.1
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 3.6e-102 375.9 304 66.4
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 7.4e-100 368.2 291 66.7
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.7e-99 367.1 269 72.9
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 6.3e-99 365.2 348 60.3
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.1e-98 362.8 231 79.7
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 7.0e-98 361.7 291 66.7
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 9.1e-98 361.3 274 68.6
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 9.1e-98 361.3 307 64.2
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 7.7e-97 358.2 290 65.2
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 1.2e-94 350.9 302 62.6
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 6.1e-94 348.6 299 64.2
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 4.0e-93 345.9 276 65.6
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 5.0e-88 328.9 211 82.0
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 4.8e-83 312.4 283 64.0
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 8.3e-83 311.6 288 56.9
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 1.2e-81 307.8 308 57.5
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 3.0e-77 293.1 265 62.6
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 2.0e-76 290.4 224 68.8
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 9.2e-74 281.6 299 51.2
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.0e-69 268.1 254 60.2
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.5e-68 264.2 229 62.9
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 4.4e-68 262.7 212 62.7
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 2.2e-67 260.4 291 52.6
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 1.2e-65 254.6 205 68.3
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 3.5e-65 253.1 162 79.0
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 2.1e-57 227.3 269 46.5
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 5.8e-52 209.1 162 69.1
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 3.8e-43 179.9 169 59.8
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 4.4e-36 156.4 177 52.5
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 4.4e-36 156.4 177 52.5
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 1.7e-35 154.5 145 63.4
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 4.6e-33 146.4 106 69.8
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 4.6e-33 146.4 106 69.8
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 4.8e-30 136.3 97 71.1
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 1.4e-29 134.8 79 83.5
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 1.3e-27 128.3 94 72.3
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 2.5e-23 114.0 101 63.4
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 8.4e-19 99.0 88 65.9
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 5.5e-18 96.3 77 63.6
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.8e-16 91.3 58 81.0
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 7.4e-15 85.9 77 55.8
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 1.6e-14 84.7 77 57.1
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 8.2e-14 82.4 52 82.7
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 4.1e-13 80.1 83 50.6
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 1.5e-12 78.2 68 60.3
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 1.5e-12 78.2 77 55.8
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 5.8e-12 76.3 68 60.3
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 2.9e-11 73.9 85 45.9
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 5.0e-11 73.2 68 64.7
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.2e-09 68.6 60 56.7
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 1.3e-08 65.1 40 75.0
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 6.7e-08 62.8 93 39.8
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 8.7e-08 62.4 39 74.4
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 8.7e-08 62.4 39 74.4


User provided reference genes

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