Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 3.6e-202 708.0 346 100.0
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 2.0e-144 516.2 332 74.7
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 2.9e-143 512.3 314 77.4
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 6.0e-141 504.6 313 76.4
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 3.9e-140 501.9 344 72.1
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 6.7e-140 501.1 334 72.5
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 1.4e-137 493.4 311 75.6
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 3.1e-137 492.3 321 72.6
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 1.2e-136 490.3 328 72.3
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 2.0e-136 489.6 338 69.2
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 2.0e-136 489.6 337 71.2
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 2.6e-136 489.2 328 72.3
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 2.6e-136 489.2 330 71.2
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 4.5e-136 488.4 311 74.0
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.3e-135 486.9 330 72.7
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 3.8e-135 485.3 320 74.4
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 6.5e-135 484.6 320 74.7
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 2.5e-134 482.6 326 70.6
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 3.2e-134 482.3 306 75.2
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 4.2e-134 481.9 330 70.0
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 9.3e-134 480.7 329 70.2
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 1.2e-133 480.3 330 71.5
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 2.1e-133 479.6 338 69.8
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 2.7e-133 479.2 331 71.9
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 2.3e-132 476.1 337 68.8
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 3.0e-132 475.7 326 71.8
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 3.9e-132 475.3 328 69.8
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 6.7e-132 474.6 329 71.1
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 1.9e-131 473.0 312 73.1
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 1.9e-131 473.0 348 67.5
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 7.4e-131 471.1 312 73.1
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 7.4e-131 471.1 312 73.4
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 7.4e-131 471.1 324 67.9
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 7.4e-131 471.1 322 71.4
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 1.3e-130 470.3 328 69.2
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 2.2e-130 469.5 329 68.7
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.2e-130 469.5 318 71.1
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 3.7e-130 468.8 324 70.1
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 6.3e-130 468.0 324 71.0
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 6.3e-130 468.0 314 71.3
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 4.1e-129 465.3 314 70.4
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 4.1e-129 465.3 321 69.8
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 5.3e-129 464.9 314 72.3
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 6.9e-129 464.5 313 71.9
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 9.1e-129 464.2 311 71.4
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 1.2e-128 463.8 344 67.7
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 1.2e-128 463.8 312 71.2
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 7.7e-128 461.1 312 70.8
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 1.3e-127 460.3 311 72.3
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 1.3e-127 460.3 345 66.1
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 1.4e-126 456.8 311 70.1
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 1.4e-126 456.8 338 66.9
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 1.4e-126 456.8 322 68.9
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 1.9e-126 456.4 345 65.8
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 9.4e-126 454.1 319 69.0
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 7.9e-125 451.1 346 65.9
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 7.9e-125 451.1 310 70.0
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 1.8e-124 449.9 327 67.9
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 8.8e-124 447.6 324 67.9
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 2.0e-123 446.4 311 70.1
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 1.3e-122 443.7 315 68.9
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.2e-122 443.0 322 68.0
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 4.1e-121 438.7 319 69.3
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 4.1e-121 438.7 270 76.3
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 5.3e-121 438.3 323 67.8
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 1.5e-120 436.8 273 75.1
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 2.2e-119 433.0 305 69.5
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 2.9e-119 432.6 304 69.7
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 2.9e-119 432.6 304 69.7
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.5e-118 429.5 283 71.7
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 4.2e-118 428.7 304 69.1
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 4.2e-118 428.7 304 69.1
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 4.2e-118 428.7 319 68.3
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 4.2e-118 428.7 346 64.2
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 5.5e-118 428.3 304 69.1
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 8.0e-117 424.5 326 66.6
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 8.0e-117 424.5 292 71.9
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 1.0e-116 424.1 287 72.5
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 1.0e-116 424.1 308 68.8
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 1.4e-116 423.7 318 67.0
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 3.0e-116 422.5 287 72.1
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 5.2e-116 421.8 286 71.0
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 5.2e-116 421.8 291 68.7
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 4.4e-115 418.7 284 72.9
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 1.3e-114 417.2 321 64.5
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 2.2e-114 416.4 298 69.1
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 8.2e-114 414.5 290 68.6
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 8.2e-114 414.5 245 78.4
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 5.3e-113 411.8 345 63.8
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 5.9e-112 408.3 320 62.8
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 1.3e-111 407.1 230 83.9
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.5e-110 403.7 270 70.4
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 1.9e-110 403.3 248 77.8
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 2.7e-109 399.4 329 62.6
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 2.3e-108 396.4 216 85.2
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 4.4e-107 392.1 284 67.6
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 4.2e-102 375.6 305 61.3
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 1.4e-100 370.5 278 68.3
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 2.8e-98 362.8 312 60.6
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 6.1e-93 345.1 320 55.9
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 2.3e-92 343.2 231 69.3
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 3.8e-87 325.9 185 83.2
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 3.8e-87 325.9 185 83.2
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 9.8e-83 311.2 315 48.9
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 8.9e-76 288.1 196 71.4
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 5.8e-75 285.4 211 66.4
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 8.9e-68 261.5 215 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 2.6e-67 260.0 189 65.6
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 1.3e-63 247.7 151 78.1
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 2.0e-59 233.8 201 59.7
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 2.1e-45 187.2 184 50.5
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 9.3e-33 145.2 78 83.3
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 9.3e-33 145.2 122 54.9
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 1.1e-25 121.7 135 51.1
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.4e-17 94.7 66 68.2
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 2.2e-10 70.9 54 64.8
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 6.7e-07 59.3 167 28.1
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 1.1e-06 58.5 174 27.0
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 1.5e-06 58.2 167 29.9
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 3.3e-06 57.0 170 27.6
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 3.3e-06 57.0 167 29.9
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 3.3e-06 57.0 167 29.9
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 3.3e-06 57.0 167 29.9
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 3.3e-06 57.0 167 29.3
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 7.4e-06 55.8 170 28.2
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 7.4e-06 55.8 170 28.2
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 7.4e-06 55.8 170 28.2
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 9.7e-06 55.5 167 29.3
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 9.7e-06 55.5 167 29.3
Eucgr.C04044 Eucalyptus grandis HOM05D003204 ORTHO05D003566 9.7e-06 55.5 167 28.1


User provided reference genes

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