Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 0.0e+00 1095.1 530 100.0
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 0.0e+00 1078.5 530 97.7
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 1.6e-262 909.1 523 80.5
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 5.1e-256 887.5 522 77.8
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.1e-255 886.3 523 78.2
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 3.3e-255 884.8 522 77.6
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 6.2e-254 880.6 528 78.0
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.9e-251 871.7 520 77.1
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 5.6e-247 857.4 515 77.1
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 5.6e-247 857.4 515 77.3
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 5.3e-245 850.9 515 76.9
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 2.0e-244 849.0 520 76.5
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.9e-242 842.4 515 76.5
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 2.4e-242 842.0 522 73.9
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 9.3e-242 840.1 519 74.4
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.0e-240 836.6 521 73.7
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 1.0e-240 836.6 518 73.4
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 3.0e-240 835.1 518 73.6
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.9e-240 834.7 523 73.8
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 1.9e-239 832.4 521 74.9
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 2.5e-239 832.0 522 73.2
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 3.3e-239 831.6 513 75.0
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 2.8e-238 828.6 530 72.3
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 8.1e-238 827.0 515 74.6
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 1.4e-237 826.2 522 72.8
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 2.4e-237 825.5 497 77.7
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 5.3e-237 824.3 521 73.3
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.9e-237 823.9 543 70.7
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 2.6e-236 822.0 536 71.8
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 5.8e-236 820.8 518 72.8
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 5.8e-236 820.8 518 72.8
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.7e-235 819.3 513 74.5
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 3.2e-234 815.1 520 72.5
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.6e-233 812.8 517 71.8
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 2.1e-233 812.4 518 71.0
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 3.5e-233 811.6 469 80.4
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 6.0e-233 810.8 518 70.1
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 1.3e-232 809.7 518 70.3
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 1.8e-232 809.3 519 71.1
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 1.8e-232 809.3 518 70.3
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 2.3e-232 808.9 518 70.8
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.3e-232 808.9 520 72.1
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 3.9e-232 808.1 515 71.1
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 5.1e-232 807.7 521 72.2
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 2.5e-231 805.4 519 70.5
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 2.5e-231 805.4 490 75.3
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 3.3e-231 805.1 516 72.1
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 7.4e-231 803.9 514 72.2
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 1.3e-230 803.1 523 69.8
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 6.3e-230 800.8 520 68.8
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 6.3e-230 800.8 516 70.2
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 8.2e-230 800.4 514 71.0
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 2.4e-229 798.9 516 69.8
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 4.1e-229 798.1 519 69.4
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 2.0e-228 795.8 509 70.9
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 4.5e-228 794.7 522 70.1
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 7.6e-228 793.9 516 70.0
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.0e-227 793.5 518 73.2
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 1.0e-227 793.5 521 69.9
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 3.6e-225 785.0 519 69.2
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 2.3e-224 782.3 517 69.6
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 2.3e-224 782.3 517 69.6
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 8.7e-224 780.4 576 63.9
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.1e-223 780.0 566 65.2
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 3.3e-223 778.5 517 69.2
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 4.3e-223 778.1 517 69.1
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.6e-222 776.2 517 69.1
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 2.8e-222 775.4 529 71.1
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 8.2e-222 773.9 517 68.7
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 6.9e-221 770.8 514 68.9
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.2e-220 770.0 514 69.3
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 1.7e-219 766.1 515 69.3
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 1.4e-218 763.1 542 66.1
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.5e-218 762.3 518 71.2
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 9.4e-218 760.4 541 65.6
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.2e-217 760.0 526 67.1
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 2.4e-213 745.7 473 71.2
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 6.9e-213 744.2 519 66.1
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 1.1e-210 736.9 510 69.2
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 1.1e-210 736.9 441 77.3
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.4e-210 736.5 694 54.6
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.6e-207 725.7 552 65.0
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 5.7e-207 724.5 518 63.7
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 2.2e-206 722.6 521 65.6
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 4.1e-205 718.4 518 64.5
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 2.9e-203 712.2 502 69.1
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 8.8e-200 700.7 529 61.1
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 4.4e-199 698.4 435 72.9
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.7e-198 696.4 518 66.0
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 8.2e-198 694.1 494 68.6
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.5e-195 684.5 522 63.8
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 8.5e-195 684.1 586 58.9
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.9e-194 682.9 397 77.6
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.0e-192 675.6 578 59.0
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 9.1e-189 664.1 391 75.7
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 5.2e-176 621.7 420 66.2
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 4.6e-172 608.6 494 60.1
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 2.8e-169 599.4 518 54.4
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 7.5e-167 591.3 533 54.4
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 8.3e-166 587.8 363 74.1
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 7.0e-165 584.7 335 79.1
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.4e-152 543.9 307 79.8
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.3e-152 543.1 525 53.5
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 8.9e-152 541.2 518 52.9
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 8.9e-152 541.2 506 53.2
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.0e-151 540.0 351 71.5
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 9.9e-143 511.1 358 68.4
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 6.4e-142 508.4 283 80.2
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 3.8e-134 482.6 549 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.4e-133 480.7 435 52.9
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 3.7e-129 466.1 342 64.3
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.4e-125 454.1 252 80.2
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 2.3e-115 420.2 231 82.3
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 4.8e-113 412.5 228 80.7
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 4.8e-113 412.5 228 80.7
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 2.4e-112 410.2 286 67.8
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 5.1e-107 392.5 228 75.0
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.4e-88 331.3 211 73.0
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 4.1e-88 329.7 527 39.3
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.6e-87 327.8 208 73.1
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 7.0e-80 302.4 166 79.5
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.6e-71 274.6 171 74.9
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 4.5e-71 273.1 240 59.2
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 4.5e-71 273.1 530 34.2
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.1e-69 268.5 564 31.6
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 4.2e-69 266.5 606 30.9
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 1.4e-67 261.5 536 34.3
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 4.0e-67 260.0 366 44.3
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.6e-60 238.0 195 58.5
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 9.5e-53 212.2 262 44.7
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 2.4e-48 197.6 336 36.6
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 2.7e-47 194.1 163 63.8
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.1e-35 155.6 85 75.3
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.6e-34 149.4 103 74.8
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 3.8e-33 147.1 102 71.6
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 4.1e-32 143.7 107 64.5
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 6.0e-31 139.8 196 41.8
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 3.9e-30 137.1 99 63.6
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 2.8e-28 131.0 82 72.0
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 4.0e-27 127.1 119 50.4
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.6e-23 115.2 92 59.8
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 5.1e-22 110.2 270 32.2
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 9.6e-13 79.3 41 70.7
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 3.7e-12 77.4 100 46.0
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 4.9e-09 67.0 51 64.7
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.3e-06 58.9 80 40.0


User provided reference genes

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