Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 2.1e-97 359.0 176 100.0
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 2.6e-92 342.0 176 93.8
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 3.4e-92 341.7 176 93.2
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.7e-91 339.3 176 93.2
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.7e-91 339.3 176 93.2
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.7e-91 339.3 176 93.2
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 3.8e-91 338.2 176 92.6
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 7.2e-90 334.0 176 92.0
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 3.9e-88 328.2 176 89.2
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 1.5e-87 326.2 176 89.2
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 2.8e-86 322.0 176 87.5
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.8e-86 322.0 176 87.5
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 5.3e-85 317.8 176 86.9
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.6e-84 316.2 176 85.8
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 3.5e-84 315.1 176 85.2
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.3e-83 313.2 176 86.9
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 5.0e-83 311.2 177 85.3
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 6.5e-83 310.8 177 84.2
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 6.5e-83 310.8 177 84.2
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 8.5e-83 310.5 167 88.6
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 1.9e-82 309.3 176 83.5
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.5e-82 308.9 176 83.0
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 4.2e-82 308.1 177 83.6
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 9.4e-82 307.0 166 88.6
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.2e-81 306.6 166 89.2
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 2.1e-81 305.8 168 86.9
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 3.6e-81 305.1 172 84.9
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 4.7e-81 304.7 176 81.8
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 1.0e-80 303.5 177 82.5
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 2.3e-80 302.4 177 84.2
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 2.3e-80 302.4 176 84.1
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 2.3e-80 302.4 170 84.1
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 4.0e-80 301.6 176 81.2
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 4.0e-80 301.6 176 84.1
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 6.7e-80 300.8 176 83.0
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 6.7e-80 300.8 175 84.0
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 6.7e-80 300.8 176 83.5
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 8.8e-80 300.4 177 81.9
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.5e-79 299.7 176 83.0
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 1.5e-79 299.7 176 83.0
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 2.0e-79 299.3 167 85.0
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.0e-79 299.3 176 83.5
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 2.0e-79 299.3 164 87.8
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 2.0e-79 299.3 176 79.5
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 3.3e-79 298.5 176 83.0
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 4.4e-79 298.1 177 81.4
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 5.7e-79 297.7 177 81.4
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 5.7e-79 297.7 181 82.3
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 9.7e-79 297.0 176 82.4
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 9.7e-79 297.0 179 80.4
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 2.2e-78 295.8 177 80.8
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 2.8e-78 295.4 176 81.2
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.8e-78 295.4 176 81.8
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.8e-78 295.4 176 81.8
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 3.7e-78 295.0 178 81.5
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.7e-78 295.0 176 80.7
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 4.8e-78 294.7 177 80.8
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 6.3e-78 294.3 179 79.9
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 8.2e-78 293.9 176 79.5
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 8.2e-78 293.9 176 81.8
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 2.4e-77 292.4 175 80.0
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 9.1e-77 290.4 176 80.7
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 9.1e-77 290.4 176 79.0
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 1.2e-76 290.0 167 86.2
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.6e-76 289.7 176 79.0
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.6e-76 289.7 177 79.7
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 2.0e-76 289.3 176 79.0
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.5e-76 288.5 176 80.7
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.5e-76 288.1 176 78.4
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 5.9e-76 287.7 170 80.6
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.0e-75 287.0 176 78.4
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.7e-75 286.2 176 77.8
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 2.2e-75 285.8 177 78.0
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 2.2e-75 285.8 175 78.3
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 3.8e-75 285.0 183 79.2
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 3.8e-75 285.0 176 77.3
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 5.0e-75 284.6 176 79.5
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.1e-74 283.5 167 83.8
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.9e-74 282.7 161 86.3
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.5e-74 281.2 171 80.7
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 5.5e-74 281.2 176 77.8
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 7.2e-74 280.8 154 87.7
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 7.2e-74 280.8 176 75.0
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.6e-73 279.6 174 77.6
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 2.1e-73 279.3 178 77.0
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 2.7e-73 278.9 169 78.1
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.7e-73 278.9 175 76.6
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.7e-73 278.9 175 76.6
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 2.7e-73 278.9 174 76.4
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 3.6e-73 278.5 169 78.1
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 3.6e-73 278.5 169 78.1
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 3.6e-73 278.5 169 78.1
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 3.6e-73 278.5 175 76.6
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.1e-73 277.7 175 76.0
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 6.1e-73 277.7 176 73.9
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 8.0e-73 277.3 169 77.5
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 1.4e-72 276.6 176 76.7
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.4e-72 276.6 228 64.0
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 2.3e-72 275.8 166 78.9
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 2.3e-72 275.8 168 79.8
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 2.3e-72 275.8 172 75.6
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.0e-72 275.4 169 76.9
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 3.0e-72 275.4 167 79.6
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 3.0e-72 275.4 174 76.4
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 8.8e-72 273.9 178 73.0
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 8.8e-72 273.9 168 78.6
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 1.2e-71 273.5 166 79.5
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.5e-71 273.1 176 76.1
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 2.6e-71 272.3 174 74.7
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 3.4e-71 271.9 172 74.4
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 7.5e-71 270.8 164 78.7
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 1.7e-70 269.6 164 78.0
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.2e-70 269.2 177 73.4
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 2.8e-70 268.9 165 81.8
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 6.3e-70 267.7 178 73.0
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 8.3e-70 267.3 177 73.4
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.4e-69 266.5 171 74.9
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 9.1e-69 263.8 176 73.3
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.2e-68 263.5 167 76.0
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.7e-68 262.3 156 82.1
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.5e-68 261.9 167 75.4
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 7.7e-68 260.8 168 75.0
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 7.7e-68 260.8 176 71.6
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 1.0e-67 260.4 170 72.9
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 2.9e-67 258.8 174 70.1
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 3.2e-66 255.4 166 74.1
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 3.2e-66 255.4 123 100.0
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 3.2e-66 255.4 123 100.0
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 5.5e-66 254.6 157 77.1
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 2.8e-65 252.3 169 72.2
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 4.7e-65 251.5 158 75.9
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 4.7e-65 251.5 177 66.7
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 3.0e-64 248.8 174 68.4
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.5e-63 246.5 167 70.7
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 5.7e-63 244.6 175 67.4
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 6.1e-57 224.6 167 65.9
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.8e-56 223.0 167 63.5
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.7e-54 216.5 138 77.5
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 2.4e-53 212.6 124 82.3
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.6e-52 208.4 123 79.7
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.0e-51 207.2 123 80.5
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 5.0e-51 204.9 114 85.1
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 2.0e-47 193.0 191 51.3
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.3e-46 190.3 116 80.2
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 8.1e-41 171.0 175 50.9
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 7.5e-39 164.5 84 90.5
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 8.3e-38 161.0 98 74.5
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.1e-37 158.7 105 70.5
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 9.2e-37 157.5 102 72.5
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 2.6e-31 139.4 95 73.7
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 3.1e-24 115.9 60 85.0
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 2.6e-23 112.8 109 56.9
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 4.9e-22 108.6 184 34.8
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.4e-21 106.3 116 45.7
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 2.1e-20 103.2 164 36.6
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.7e-20 102.8 141 41.1
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.5e-20 102.4 117 47.9
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-19 99.4 97 54.6
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 2.1e-17 93.2 54 83.3
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 2.0e-15 86.7 52 82.7
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 6.4e-14 81.6 48 79.2
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 9.3e-13 77.8 50 76.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 1.9e-10 70.1 63 61.9
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 2.2e-06 56.6 72 50.0
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 6.4e-06 55.1 35 68.6


User provided reference genes

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