Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27280 Coffea canephora HOM05D003124 ORTHO05D003831 4.5e-39 164.1 81 100.0
Cc09_g08910 Coffea canephora HOM05D003124 ORTHO05D003831 3.2e-16 88.2 111 49.5
Aqoxy7G03170 Aquilegia oxysepala HOM05D003124 ORTHO05D003831 9.5e-13 76.6 113 41.6
Cc02_g23770 Coffea canephora HOM05D003124 ORTHO05D003831 6.2e-12 73.9 40 87.5
Cc07_g09940 Coffea canephora HOM05D003124 ORTHO05D003831 1.1e-11 73.2 145 37.2
Nitab4.5_0008224g0020 Nicotiana tabacum HOM05D003124 ORTHO05D003831 2.3e-11 72.0 116 40.5
Cc06_g19430 Coffea canephora HOM05D003124 ORTHO05D003831 3.1e-11 71.6 104 44.2
BcaC02g10187 Brassica carinata HOM05D003124 ORTHO05D003831 6.8e-11 70.5 109 40.4
Cc02_g36680 Coffea canephora HOM05D003124 ORTHO05D003831 1.5e-10 69.3 145 35.2
Manes.01G265800 Manihot esculenta HOM05D003124 ORTHO05D003831 1.5e-10 69.3 145 35.9
CiPaw.01G261800 Carya illinoinensis HOM05D003124 ORTHO05D003831 2.0e-10 68.9 145 35.2
RcHm_v2.0_Chr1g0350601 Rosa chinensis HOM05D003124 ORTHO05D003831 2.0e-10 68.9 57 64.9
Atru.chr10.1178 Acer truncatum HOM05D003124 ORTHO05D003831 3.4e-10 68.2 145 35.2
ATR0712G143 Amborella trichopoda HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
EL10Ac1g00896 Beta vulgaris HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
AUR62004218 Chenopodium quinoa HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
AUR62013630 Chenopodium quinoa HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
CsaV3_3G009670 Cucumis sativus L. HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
ECA240G4554 Erigeron canadensis HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
Eucgr.E01416 Eucalyptus grandis HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
Thhalv10006409m.g Eutrema salsugineum HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
HanXRQChr03g0093901 Helianthus annuus HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
Lsat_1_v5_gn_3_132000 Lactuca sativa HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
Lsat_1_v5_gn_4_40961 Lactuca sativa HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
Prupe.2G145800 Prunus persica HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
Rhsim07G0027400 Rhododendron simsii HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
SGA_v2.0_scaffold43G16475 Striga asiatica HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
THA.LOC104802445 Tarenaya hassleriana HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
THA.LOC104817248 Tarenaya hassleriana HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
VMungo0251G2852 Vigna mungo HOM05D003124 ORTHO05D003831 3.4e-10 68.2 57 64.9
Actinidia12259 Actinidia chinensis HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
Actinidia12689 Actinidia chinensis HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
Actinidia31411 Actinidia chinensis HOM05D003124 ORTHO05D002299 4.4e-10 67.8 57 64.9
Ah.05g174140 Amaranthus hybridus HOM05D002032 ORTHO05D002247 4.4e-10 67.8 57 64.9
Ah.05g174150 Amaranthus hybridus HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
Ah.10g025390 Amaranthus hybridus HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
MSTRG.17194 Avicennia marina HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
MSTRG.17195 Avicennia marina HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
MSTRG.28187 Avicennia marina HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
CSS0005196 Camellia sinensis var. sinensis HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
CSS0011728 Camellia sinensis var. sinensis HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
CDE04G3268 Ceratophyllum demersum HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
CDE12G0228 Ceratophyllum demersum HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
FAN01G2692 Fragaria x ananassa HOM05D003124 ORTHO05D003831 4.4e-10 67.8 58 62.1
FAN06G3432 Fragaria x ananassa HOM05D003124 ORTHO05D003831 4.4e-10 67.8 58 62.1
FAN10G0051 Fragaria x ananassa HOM05D003124 ORTHO05D003831 4.4e-10 67.8 58 62.1
FAN10G2702 Fragaria x ananassa HOM05D003124 ORTHO05D003831 4.4e-10 67.8 58 62.1
Glyma.08G286200 Glycine max HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
Glyma.18G138900 Glycine max HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
HanXRQChr13g0425221 Helianthus annuus HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
Hma1.2p1_0033F.1_g021050 Hydrangea macrophylla HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 63.2
Lalb_Chr07g0189781 Lupinus albus HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
Lalb_Chr12g0208271 Lupinus albus HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
MBI12_g10756_MAGBIO Magnolia biondii HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
Nn1g01231 Nelumbo nucifera HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
PGR102G2215 Punica granatum HOM05D003124 ORTHO05D003831 4.4e-10 67.8 145 34.5
Sc02g0002570 Simmondsia chinensis HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
TWI59G1020 Tripterygium wilfordii HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
vmacro13398 Vaccinium macrocarpon HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
vmacro21007 Vaccinium macrocarpon HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
VMungo0464G0735 Vigna mungo HOM05D003124 ORTHO05D003831 4.4e-10 67.8 57 64.9
Cfa001719 Carpinus fangiana HOM05D003124 ORTHO05D003831 5.8e-10 67.4 57 63.2
Cfa003809 Carpinus fangiana HOM05D003124 ORTHO05D003831 5.8e-10 67.4 57 63.2
Haze_15645 Corylus avellana HOM05D003124 ORTHO05D003831 5.8e-10 67.4 57 63.2
Haze_16817 Corylus avellana HOM05D003124 ORTHO05D003831 5.8e-10 67.4 57 63.2
FvH4_7g11920 Fragaria vesca HOM05D003124 ORTHO05D003831 5.8e-10 67.4 57 63.2
unitig_32.g10932 Utricularia gibba HOM05D003124 ORTHO05D003831 5.8e-10 67.4 57 63.2
CANSAT56G3211 Cannabis sativa HOM05D003124 ORTHO05D003831 7.5e-10 67.0 57 63.2
CiPaw.02G167600 Carya illinoinensis HOM05D003124 ORTHO05D003831 7.5e-10 67.0 57 63.2
Migut.B01636 Erythranthe guttata HOM05D003124 ORTHO05D003831 7.5e-10 67.0 145 35.9
Lj3g0012915 Lotus japonicus HOM05D003124 ORTHO05D003831 7.5e-10 67.0 57 63.2
MD02G1204000 Malus domestica HOM05D003124 ORTHO05D003831 7.5e-10 67.0 56 64.3
MD07G1122000 Malus domestica HOM05D003124 ORTHO05D003831 7.5e-10 67.0 56 64.3
Manes.05G045100 Manihot esculenta HOM05D003124 ORTHO05D003831 7.5e-10 67.0 57 63.2
Pp3c16_16960 Physcomitrium patens HOM05D003124 ORTHO05D003831 7.5e-10 67.0 58 62.1
QL08p052463 Quercus lobata HOM05D003124 ORTHO05D003831 7.5e-10 67.0 56 64.3
Atru.chr5.311 Acer truncatum HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 61.4
Aa31LG10G15060 Aethionema arabicum HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
AL5G43140 Arabidopsis lyrata HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
AT3G60820 Arabidopsis thaliana HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
arahy.Tifrunner.gnm1.ann1.FA29PG Arachis hypogaea HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
arahy.Tifrunner.gnm1.ann1.GL64VW Arachis hypogaea HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
BcaC08g45086 Brassica carinata HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 61.4
A07p25220 Brassica napus HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 61.4
C06p26930 Brassica napus HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 61.4
BolC6t37867H Brassica oleracea HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 61.4
BraA07t30164Z Brassica rapa HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 61.4
Carub.0005s2757 Capsella rubella HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
CARHR171210 Cardamine hirsuta HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
COL.COLO4_12550 Corchorus olitorius HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Dinv32379 Davidia involucrata HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Duzib133G0737 Durio zibethinus HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Duzib138G1909 Durio zibethinus HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Gohir.A07G145500 Gossypium hirsutum HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Gohir.A08G031200 Gossypium hirsutum HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Gohir.D07G151700 Gossypium hirsutum HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Gohir.D08G042300 Gossypium hirsutum HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Gorai.001G173600 Gossypium raimondii HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Gorai.004G040900 Gossypium raimondii HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Lj4A208T81 Lonicera japonica HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Oeu037914.1 Olea europaea HOM05D003124 ORTHO05D003831 9.9e-10 66.6 56 64.3
Phvul.003G061000 Phaseolus vulgaris HOM05D003124 ORTHO05D003831 9.9e-10 66.6 56 64.3
Thecc.01G376000 Theobroma cacao HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
GSVIVG01027613001 Vitis vinifera HOM05D003124 ORTHO05D003831 9.9e-10 66.6 57 63.2
Aqoxy5G00263 Aquilegia oxysepala HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
BcaB02g07399 Brassica carinata HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
BcaC07g40603 Brassica carinata HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
BcaC07g42643 Brassica carinata HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
A04p01400 Brassica napus HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
A09p53080 Brassica napus HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
C08p35780 Brassica napus HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
BolC1t03897H Brassica oleracea HOM05D003124 ORTHO05D041156 1.3e-09 66.2 65 56.9
BolC4t24727H Brassica oleracea HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
BolC8t51168H Brassica oleracea HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
BraA04t15859Z Brassica rapa HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
BraA09t40734Z Brassica rapa HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
CSS0021281 Camellia sinensis var. sinensis HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 63.2
Lj7A528T56 Lonicera japonica HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
Nitab4.5_0000344g0130 Nicotiana tabacum HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 63.2
Oeu005784.1 Olea europaea HOM05D003124 ORTHO05D003831 1.3e-09 66.2 56 64.3
Sp5g02430 Schrenkiella parvula HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
SGA_v2.0_scaffold11G05585 Striga asiatica HOM05D003124 ORTHO05D003831 1.3e-09 66.2 60 60.0
TWI23G0395 Tripterygium wilfordii HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 63.2
TAR636G1572 Trochodendron aralioides HOM05D003124 ORTHO05D003831 1.3e-09 66.2 57 61.4
C01p39470 Brassica napus HOM05D003124 ORTHO05D041156 1.7e-09 65.9 65 55.4
Ca_06661_v3 Cicer arietinum L. HOM05D003124 ORTHO05D003831 1.7e-09 65.9 56 62.5
Ca_19905_v3 Cicer arietinum L. HOM05D003124 ORTHO05D003831 1.7e-09 65.9 56 62.5
Ca_19907_v3 Cicer arietinum L. HOM05D003124 ORTHO05D003831 1.7e-09 65.9 56 62.5
MBI04_g35277_MAGBIO Magnolia biondii HOM05D003124 ORTHO05D003831 1.7e-09 65.9 57 63.2
Medtr2g098010 Medicago truncatula HOM05D003124 ORTHO05D003831 1.7e-09 65.9 56 62.5
Medtr5g079740 Medicago truncatula HOM05D003124 ORTHO05D003831 1.7e-09 65.9 56 62.5
Os09g0505600 Oryza sativa ssp. japonica HOM05D003124 ORTHO05D003831 1.7e-09 65.9 57 61.4
Psat5g271920 Pisum sativum HOM05D003124 ORTHO05D003831 1.7e-09 65.9 56 62.5
SalBow5G2585 Salvia bowleyana HOM05D003124 ORTHO05D003831 1.7e-09 65.9 57 61.4
SalBow5G5391 Salvia bowleyana HOM05D003124 ORTHO05D003831 1.7e-09 65.9 57 61.4
TPR.G3493 Trifolium pratense HOM05D003124 ORTHO05D003831 1.7e-09 65.9 56 62.5
TPR.G6863 Trifolium pratense HOM05D003124 ORTHO05D003831 1.7e-09 65.9 56 62.5
Zm00001eb102400 Zea mays HOM05D003124 ORTHO05D003831 1.7e-09 65.9 57 61.4
Zm00001eb355470 Zea mays HOM05D003124 ORTHO05D003831 1.7e-09 65.9 57 61.4
AagrBONN_evm.TU.Sc2ySwM_228.3283 Anthoceros agrestis HOM05D003124 ORTHO05D003831 2.2e-09 65.5 45 73.3
CAN.G1019.4 Capsicum annuum HOM05D003124 ORTHO05D003831 2.2e-09 65.5 57 61.4
Cpa.g.sc349.3 Carica papaya HOM05D003124 ORTHO05D003831 2.2e-09 65.5 57 61.4
MELO3C006187.2 Cucumis melo HOM05D003124 ORTHO05D003831 2.2e-09 65.5 56 62.5
DCAR_006866 Daucus carota HOM05D003124 ORTHO05D003831 2.2e-09 65.5 56 62.5
Nitab4.5_0000136g0220 Nicotiana tabacum HOM05D003124 ORTHO05D003831 2.2e-09 65.5 57 61.4
Nitab4.5_0001525g0010 Nicotiana tabacum HOM05D003124 ORTHO05D003831 2.2e-09 65.5 57 61.4
Peaxi162Scf00008g03318 Petunia axillaris HOM05D003124 ORTHO05D003831 2.2e-09 65.5 57 61.4
Sed0026826 Sechium edule HOM05D003124 ORTHO05D003831 2.2e-09 65.5 56 62.5
Hund17019 Selenicereus undatus HOM05D003124 ORTHO05D003831 2.2e-09 65.5 57 63.2
PGSC0003DMG400022569 Solanum tuberosum HOM05D003124 ORTHO05D003831 2.2e-09 65.5 56 62.5
unitig_748.g8185 Utricularia gibba HOM05D003124 ORTHO05D003831 2.2e-09 65.5 57 61.4
CAN.G358.42 Capsicum annuum HOM05D003124 ORTHO05D003831 2.9e-09 65.1 57 61.4
ClCG05G002210 Citrullus lanatus HOM05D003124 ORTHO05D003831 2.9e-09 65.1 56 62.5
Dinv43712 Davidia involucrata HOM05D003124 ORTHO05D003831 2.9e-09 65.1 57 61.4
Nitab4.5_0003001g0030 Nicotiana tabacum HOM05D003124 ORTHO05D003831 2.9e-09 65.1 57 61.4
Nitab4.5_0005626g0010 Nicotiana tabacum HOM05D003124 ORTHO05D003831 2.9e-09 65.1 57 61.4
Sed0009819 Sechium edule HOM05D003124 ORTHO05D003831 2.9e-09 65.1 56 62.5
Solyc02g084920.3 Solanum lycopersicum HOM05D003124 ORTHO05D003831 2.9e-09 65.1 57 61.4
Sopen02g029590 Solanum pennellii HOM05D003124 ORTHO05D003831 2.9e-09 65.1 57 61.4
PGSC0003DMG400003524 Solanum tuberosum HOM05D003124 ORTHO05D003831 2.9e-09 65.1 57 61.4
FAN06G2068 Fragaria x ananassa HOM05D003124 ORTHO05D003831 3.7e-09 64.7 45 71.1
C04p31790 Brassica napus HOM05D003124 ORTHO05D003831 4.9e-09 64.3 57 59.6
Ciclev10022119m.g Citrus clementina HOM05D003124 ORTHO05D003831 6.4e-09 63.9 57 59.6
Ciclev10032692m.g Citrus clementina HOM05D003124 ORTHO05D003831 6.4e-09 63.9 57 59.6
Pp3c27_2640 Physcomitrium patens HOM05D003124 ORTHO05D003831 6.4e-09 63.9 58 58.6
HPP92_003327 Vanilla planifolia HOM05D003124 ORTHO05D003831 6.4e-09 63.9 57 59.6
HPP92_003336 Vanilla planifolia HOM05D003124 ORTHO05D003831 6.4e-09 63.9 57 59.6
Mapoly0019s0015 Marchantia polymorpha HOM05D003124 ORTHO05D003831 8.3e-09 63.5 43 74.4
CBR_g21847 Chara braunii HOM05D003124 ORTHO05D003831 1.1e-08 63.2 70 47.1
Phvul.003G030301 Phaseolus vulgaris HOM05D003124 ORTHO05D003831 1.1e-08 63.2 39 79.5
GSVIVG01000943001 Vitis vinifera HOM05D003124 ORTHO05D003831 1.1e-08 63.2 40 77.5
Os08g0529100 Oryza sativa ssp. japonica HOM05D003124 ORTHO05D003831 1.4e-08 62.8 57 57.9
Sc23g0003550 Simmondsia chinensis HOM05D003124 ORTHO05D003831 3.2e-08 61.6 40 75.0
PSO017G2820 Papaver somniferum HOM05D003124 ORTHO05D003831 4.1e-08 61.2 57 57.9
PSO478G4914 Papaver somniferum HOM05D003124 ORTHO05D003831 4.1e-08 61.2 57 57.9
PSO782G4266 Papaver somniferum HOM05D003124 ORTHO05D003831 4.1e-08 61.2 57 57.9
FAN03G3077 Fragaria x ananassa HOM05D003124 ORTHO05D003831 7.1e-08 60.5 53 62.3
Zm00001eb317720 Zea mays HOM05D003124 ORTHO05D003831 7.1e-08 60.5 38 76.3
Potri.002G148300 Populus trichocarpa HOM05D003124 ORTHO05D003831 9.2e-08 60.1 34 82.4
Potri.014G069800 Populus trichocarpa HOM05D003124 ORTHO05D003831 9.2e-08 60.1 34 82.4
Sabra02G0115700 Salix brachista HOM05D003124 ORTHO05D003831 9.2e-08 60.1 34 82.4
Sabra02G0117400 Salix brachista HOM05D003124 ORTHO05D003831 9.2e-08 60.1 34 82.4
Sabra14G0049500 Salix brachista HOM05D003124 ORTHO05D003831 9.2e-08 60.1 34 82.4
Zm00001eb036440 Zea mays HOM05D003124 ORTHO05D003831 1.2e-07 59.7 57 56.1
SMO114G0021 Selaginella moellendorffii HOM05D003124 ORTHO05D003831 2.7e-07 58.5 56 55.4
Oeu064467.1 Olea europaea HOM05D003124 ORTHO05D003831 3.5e-07 58.2 52 61.5
SMO298G0001 Selaginella moellendorffii HOM05D003124 ORTHO05D003831 7.8e-07 57.0 56 53.6


User provided reference genes

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