Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.9e-77 292.4 138 100.0
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 5.9e-47 191.0 115 73.0
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 5.0e-46 188.0 115 73.9
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 5.0e-46 188.0 115 72.2
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 6.5e-46 187.6 115 72.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 6.5e-46 187.6 115 74.8
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 6.5e-46 187.6 118 68.6
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.2e-45 185.3 118 67.8
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 3.2e-45 185.3 115 72.2
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.2e-45 184.9 126 64.3
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 7.2e-45 184.1 115 72.2
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 9.4e-45 183.7 127 63.0
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 9.4e-45 183.7 115 71.3
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 9.4e-45 183.7 115 70.4
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 9.4e-45 183.7 115 70.4
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 9.4e-45 183.7 115 72.2
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.2e-44 183.3 118 67.8
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.2e-44 183.3 130 61.5
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.1e-44 182.6 118 67.8
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 2.1e-44 182.6 115 69.6
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.1e-44 182.6 119 68.1
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 2.7e-44 182.2 115 70.4
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 4.7e-44 181.4 132 61.4
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 6.1e-44 181.0 118 67.8
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 1.4e-43 179.9 119 66.4
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.4e-43 179.9 115 72.2
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.4e-43 179.9 115 69.6
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.4e-43 179.9 115 68.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.4e-43 179.9 115 68.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.4e-43 179.9 115 68.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.4e-43 179.9 114 66.7
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.8e-43 179.5 152 57.2
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.8e-43 179.5 115 70.4
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.8e-43 179.5 116 70.7
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.3e-43 179.1 115 67.8
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.0e-43 178.7 115 68.7
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 3.0e-43 178.7 115 68.7
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 3.0e-43 178.7 115 69.6
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 4.0e-43 178.3 118 61.0
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 4.0e-43 178.3 115 67.8
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 5.2e-43 177.9 115 68.7
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 5.2e-43 177.9 115 70.4
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 6.8e-43 177.6 115 68.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 6.8e-43 177.6 115 69.6
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 6.8e-43 177.6 118 66.1
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 6.8e-43 177.6 115 71.3
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 6.8e-43 177.6 115 66.1
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 8.8e-43 177.2 115 67.8
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 8.8e-43 177.2 115 67.8
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 8.8e-43 177.2 115 67.8
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 8.8e-43 177.2 115 69.6
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.2e-42 176.8 115 67.8
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.2e-42 176.8 115 69.6
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.2e-42 176.8 125 64.8
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.5e-42 176.4 115 67.0
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 2.0e-42 176.0 115 67.0
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 2.0e-42 176.0 115 67.0
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.0e-42 176.0 115 67.0
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 3.4e-42 175.3 116 65.5
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 3.4e-42 175.3 115 67.0
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.4e-42 175.3 115 66.1
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 4.4e-42 174.9 115 67.0
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 5.7e-42 174.5 115 65.2
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 5.7e-42 174.5 115 65.2
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.7e-42 174.5 133 62.4
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 5.7e-42 174.5 115 66.1
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 7.5e-42 174.1 115 65.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 7.5e-42 174.1 115 67.8
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 7.5e-42 174.1 115 66.1
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 7.5e-42 174.1 115 67.0
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 9.8e-42 173.7 115 66.1
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 9.8e-42 173.7 115 67.0
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 9.8e-42 173.7 115 67.0
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 1.3e-41 173.3 115 66.1
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.3e-41 173.3 115 67.0
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.7e-41 172.9 115 67.8
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.7e-41 172.9 115 66.1
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.2e-41 172.6 115 67.8
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.2e-41 172.6 115 67.8
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.2e-41 172.6 117 65.8
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 3.7e-41 171.8 115 65.2
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 3.7e-41 171.8 117 65.0
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 3.7e-41 171.8 115 67.0
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 6.3e-41 171.0 115 66.1
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 6.3e-41 171.0 115 67.0
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.4e-40 169.9 115 64.3
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.8e-40 169.5 117 65.8
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 2.4e-40 169.1 115 68.7
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.1e-40 168.7 118 63.6
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 3.1e-40 168.7 117 66.7
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 7.0e-40 167.5 107 66.4
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 9.1e-40 167.2 115 62.6
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.2e-39 166.8 115 64.3
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 1.2e-39 166.8 115 64.3
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.6e-39 166.4 115 63.5
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.7e-39 165.6 115 64.3
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 4.5e-39 164.9 115 62.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 4.5e-39 164.9 114 66.7
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 5.9e-39 164.5 118 61.0
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 5.9e-39 164.5 115 64.3
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.2e-38 162.5 115 60.0
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 5.0e-38 161.4 118 59.3
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 5.0e-38 161.4 115 60.0
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.1e-37 160.2 87 81.6
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 5.5e-37 157.9 145 49.7
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 7.2e-37 157.5 92 70.7
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.7e-36 154.8 93 73.1
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 8.0e-36 154.1 117 57.3
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 8.0e-36 154.1 117 57.3
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 2.6e-34 149.1 115 57.4
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.7e-33 146.4 99 62.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.2e-33 146.0 90 68.9
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 2.8e-33 145.6 93 66.7
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.1e-32 143.7 89 67.4
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.4e-32 143.3 95 65.3
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.0e-31 139.4 114 50.0
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 2.7e-31 139.0 114 53.5
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 3.5e-31 138.7 87 66.7
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.0e-30 137.1 118 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 8.6e-30 134.0 118 44.9
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 7.2e-29 131.0 125 54.4
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 2.0e-26 122.9 115 42.6
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 2.6e-26 122.5 141 39.7
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 7.5e-26 120.9 114 43.0
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.3e-25 120.2 70 67.1
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.4e-24 115.9 76 67.1
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 4.3e-21 105.1 62 71.0
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 3.1e-19 99.0 56 75.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 8.9e-19 97.4 59 71.2
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 1.2e-18 97.1 75 53.3
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 3.4e-18 95.5 100 45.0
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 7.0e-16 87.8 55 65.5
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 7.8e-15 84.3 55 61.8
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 6.6e-14 81.3 52 67.3
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.6e-12 76.6 63 50.8
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 2.1e-12 76.3 64 56.2
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 2.8e-12 75.9 56 62.5
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 1.8e-11 73.2 56 60.7
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 2.0e-10 69.7 58 53.4
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 2.0e-10 69.7 50 62.0
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.3e-09 67.0 52 57.7
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.9e-08 63.2 50 54.0
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 5.1e-06 55.1 76 36.8


User provided reference genes

Program Settings