Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g01880 Coffea canephora HOM05D005459 ORTHO05D006751 8.2e-166 587.0 305 100.0
Dinv28337 Davidia involucrata HOM05D005459 ORTHO05D006751 6.6e-99 364.8 303 65.3
Cfa016362 Carpinus fangiana HOM05D005459 ORTHO05D006751 1.2e-97 360.5 300 63.7
Haze_00111 Corylus avellana HOM05D005459 ORTHO05D006751 1.6e-97 360.1 303 64.4
vmacro10106 Vaccinium macrocarpon HOM05D005459 ORTHO05D006751 2.3e-96 356.3 298 64.1
Peaxi162Scf00618g00514 Petunia axillaris HOM05D005459 ORTHO05D006751 6.8e-96 354.8 294 66.7
Rhsim09G0203700 Rhododendron simsii HOM05D005459 ORTHO05D006751 6.8e-96 354.8 297 64.0
Migut.F01051 Erythranthe guttata HOM05D005459 ORTHO05D006751 2.0e-95 353.2 300 65.7
GSVIVG01028720001 Vitis vinifera HOM05D005459 ORTHO05D006751 1.4e-93 347.1 303 60.4
QL09p010988 Quercus lobata HOM05D005459 ORTHO05D006751 1.9e-93 346.7 302 62.3
CSS0021725 Camellia sinensis var. sinensis HOM05D005459 ORTHO05D006751 2.7e-92 342.8 316 60.1
Solyc06g051900.3 Solanum lycopersicum HOM05D005459 ORTHO05D006751 1.1e-90 337.4 295 63.1
SGA_v2.0_scaffold55G19735 Striga asiatica HOM05D005459 ORTHO05D006751 1.1e-90 337.4 303 60.4
Sopen06g017930 Solanum pennellii HOM05D005459 ORTHO05D006751 3.3e-90 335.9 295 63.1
Nitab4.5_0004934g0010 Nicotiana tabacum HOM05D005459 ORTHO05D006751 4.3e-90 335.5 294 63.6
Lj3C911T3 Lonicera japonica HOM05D005459 ORTHO05D006751 7.3e-90 334.7 297 60.6
PGSC0003DMG400002352 Solanum tuberosum HOM05D005459 ORTHO05D006751 2.1e-89 333.2 295 62.0
CAN.G589.10 Capsicum annuum HOM05D005459 ORTHO05D006751 8.1e-89 331.3 295 62.0
COL.COLO4_35657 Corchorus olitorius HOM05D005459 ORTHO05D006751 1.1e-88 330.9 299 60.2
Hma1.2p1_0327F.1_g126730 Hydrangea macrophylla HOM05D005459 ORTHO05D006751 1.4e-88 330.5 294 60.9
Prupe.2G307100 Prunus persica HOM05D005459 ORTHO05D006751 2.3e-88 329.7 300 59.0
MD07G1285000 Malus domestica HOM05D005459 ORTHO05D006751 4.0e-88 328.9 298 59.4
TWI39G1077 Tripterygium wilfordii HOM05D005459 ORTHO05D006751 5.2e-88 328.6 302 59.9
CAN.G394.13 Capsicum annuum HOM05D005459 ORTHO05D006751 6.8e-88 328.2 295 61.7
Cpa.g.sc3.50 Carica papaya HOM05D005459 ORTHO05D006751 3.4e-87 325.9 308 59.1
SalBow2G0671 Salvia bowleyana HOM05D005459 ORTHO05D006751 3.4e-87 325.9 297 59.3
FvH4_7g31010 Fragaria vesca HOM05D005459 ORTHO05D006751 4.4e-87 325.5 303 57.8
FAN06G3802 Fragaria x ananassa HOM05D005459 ORTHO05D006751 4.4e-87 325.5 303 57.8
FAN06G0889 Fragaria x ananassa HOM05D005459 ORTHO05D006751 5.8e-87 325.1 303 57.8
CiPaw.06G007500 Carya illinoinensis HOM05D005459 ORTHO05D006751 3.8e-86 322.4 268 64.9
FAN10G1158 Fragaria x ananassa HOM05D005459 ORTHO05D006751 8.4e-86 321.2 303 57.4
FAN10G1104 Fragaria x ananassa HOM05D005459 ORTHO05D006751 1.1e-85 320.9 302 57.3
arahy.Tifrunner.gnm1.ann1.7I62GA Arachis hypogaea HOM05D005459 ORTHO05D006751 1.4e-85 320.5 309 57.0
FAN01G1429 Fragaria x ananassa HOM05D005459 ORTHO05D006751 7.1e-85 318.2 303 56.8
Manes.06G157100 Manihot esculenta HOM05D005459 ORTHO05D006751 7.1e-85 318.2 303 58.4
arahy.Tifrunner.gnm1.ann1.QW5IMS Arachis hypogaea HOM05D005459 ORTHO05D006751 9.2e-85 317.8 309 57.0
Gorai.008G270800 Gossypium raimondii HOM05D005459 ORTHO05D006751 4.6e-84 315.5 299 55.9
Gohir.D12G253700 Gossypium hirsutum HOM05D005459 ORTHO05D006751 6.0e-84 315.1 299 56.2
Thecc.03G192700 Theobroma cacao HOM05D005459 ORTHO05D006751 6.0e-84 315.1 305 57.7
Lj6g0006101 Lotus japonicus HOM05D005459 ORTHO05D006751 7.8e-84 314.7 307 55.7
Gohir.D12G252700 Gossypium hirsutum HOM05D005459 ORTHO05D006751 1.0e-83 314.3 299 55.9
Lalb_Chr10g0091331 Lupinus albus HOM05D005459 ORTHO05D006751 1.0e-83 314.3 305 55.7
RcHm_v2.0_Chr1g0380091 Rosa chinensis HOM05D005459 ORTHO05D006751 3.0e-83 312.8 298 58.7
CANSAT64G0927 Cannabis sativa HOM05D005459 ORTHO05D006751 3.9e-83 312.4 305 56.4
HanXRQChr14g0462841 Helianthus annuus HOM05D005459 ORTHO05D006751 6.6e-83 311.6 294 55.8
MBI06_g32757_MAGBIO Magnolia biondii HOM05D005459 ORTHO05D006751 5.6e-82 308.5 306 54.6
TPR.G33293 Trifolium pratense HOM05D005459 ORTHO05D006751 9.6e-82 307.8 305 55.4
Glyma.10G065800 Glycine max HOM05D005459 ORTHO05D006751 2.8e-81 306.2 312 54.8
DCAR_024416 Daucus carota HOM05D005459 ORTHO05D006751 3.6e-81 305.8 299 55.5
PGR142G2821 Punica granatum HOM05D005459 ORTHO05D006751 3.6e-81 305.8 302 55.0
Medtr1g028510 Medicago truncatula HOM05D005459 ORTHO05D006751 6.2e-81 305.1 305 54.8
Potri.015G022400 Populus trichocarpa HOM05D005459 ORTHO05D006751 8.1e-81 304.7 296 57.4
unitig_578.g16671 Utricularia gibba HOM05D005459 ORTHO05D006751 8.1e-81 304.7 304 54.6
Ciclev10007115m.g Citrus clementina HOM05D005459 ORTHO05D006751 6.9e-80 301.6 300 56.3
Nn3g17990 Nelumbo nucifera HOM05D005459 ORTHO05D006751 8.9e-80 301.2 306 56.2
EL10Ac3g05347 Beta vulgaris HOM05D005459 ORTHO05D006751 1.2e-79 300.8 300 54.0
PSO135G0062 Papaver somniferum HOM05D005459 ORTHO05D006751 5.8e-79 298.5 300 55.0
Atru.chr1.246 Acer truncatum HOM05D005459 ORTHO05D006751 7.6e-79 298.1 227 65.6
Sed0000581 Sechium edule HOM05D005459 ORTHO05D006751 1.7e-78 297.0 295 55.3
CsaV3_3G021950 Cucumis sativus L. HOM05D005459 ORTHO05D006751 2.9e-78 296.2 290 56.6
Psat6g038640 Pisum sativum HOM05D005459 ORTHO05D006751 2.9e-78 296.2 305 53.8
AUR62006152 Chenopodium quinoa HOM05D005459 ORTHO05D006751 6.4e-78 295.0 327 52.3
ECA246G1562 Erigeron canadensis HOM05D005459 ORTHO05D006751 7.1e-77 291.6 286 54.5
Hma1.2p1_0327F.1_g126720 Hydrangea macrophylla HOM05D005459 ORTHO05D006751 1.2e-76 290.8 229 64.6
Lsat_1_v5_gn_2_134221 Lactuca sativa HOM05D005459 ORTHO05D006751 3.5e-76 289.3 299 54.5
Aqoxy7G00148 Aquilegia oxysepala HOM05D005459 ORTHO05D006751 7.8e-76 288.1 299 52.5
ClCG05G008710 Citrullus lanatus HOM05D005459 ORTHO05D006751 3.9e-75 285.8 324 50.6
FAN03G0338 Fragaria x ananassa HOM05D005459 ORTHO05D006751 8.7e-75 284.6 303 53.1
PSO384G0956 Papaver somniferum HOM05D005459 ORTHO05D006751 8.7e-75 284.6 300 53.0
Eucgr.K00329 Eucalyptus grandis HOM05D005459 ORTHO05D006751 2.5e-74 283.1 305 53.8
Sc13g0009600 Simmondsia chinensis HOM05D005459 ORTHO05D006751 7.3e-74 281.6 275 56.4
Duzib084G0355 Durio zibethinus HOM05D005459 ORTHO05D006751 2.8e-73 279.6 275 57.5
VMungo0647G0840 Vigna mungo HOM05D005459 ORTHO05D006751 2.8e-73 279.6 287 54.0
THA.LOC104813180 Tarenaya hassleriana HOM05D005459 ORTHO05D006751 6.2e-73 278.5 298 52.7
Dinv35306 Davidia involucrata HOM05D005459 ORTHO05D006751 8.1e-73 278.1 301 53.5
Hund04829 Selenicereus undatus HOM05D005459 ORTHO05D006751 6.9e-72 275.0 323 48.6
SHI02435 Sapria himalayana HOM05D005459 ORTHO05D006751 1.2e-71 274.2 298 50.7
Actinidia03157 Actinidia chinensis HOM05D005459 ORTHO05D006751 2.9e-70 269.6 195 71.8
BcaC06g31482 Brassica carinata HOM05D005459 ORTHO05D006751 2.7e-68 263.1 301 51.5
BolC7t43505H Brassica oleracea HOM05D005459 ORTHO05D006751 6.0e-68 261.9 301 52.5
C07p29540 Brassica napus HOM05D005459 ORTHO05D006751 1.8e-67 260.4 300 52.0
Sp7g00510 Schrenkiella parvula HOM05D005459 ORTHO05D006751 2.3e-67 260.0 300 51.7
A06p46000 Brassica napus HOM05D005459 ORTHO05D006751 3.0e-67 259.6 301 51.8
BraA06t27464Z Brassica rapa HOM05D005459 ORTHO05D006751 3.0e-67 259.6 301 51.8
ATR0661G386 Amborella trichopoda HOM05D005459 ORTHO05D006751 5.1e-67 258.8 299 47.8
Thhalv10027718m.g Eutrema salsugineum HOM05D005459 ORTHO05D006751 5.1e-67 258.8 300 52.0
Carub.0007s3402 Capsella rubella HOM05D005459 ORTHO05D006751 1.1e-66 257.7 300 51.3
AT5G41480 Arabidopsis thaliana HOM05D005459 ORTHO05D006751 4.3e-66 255.8 300 51.3
AL7G47930 Arabidopsis lyrata HOM05D005459 ORTHO05D006751 2.0e-63 246.9 301 49.2
TAR629G0715 Trochodendron aralioides HOM05D005459 ORTHO05D006751 4.5e-63 245.7 235 57.4
CDE02G4072 Ceratophyllum demersum HOM05D005459 ORTHO05D006751 1.9e-61 240.4 300 47.3
Phvul.001G060700 Phaseolus vulgaris HOM05D005459 ORTHO05D006751 2.4e-61 240.0 308 46.8
HPP92_026772 Vanilla planifolia HOM05D005459 ORTHO05D006751 2.1e-60 236.9 307 44.3
Aa31LG9G520 Aethionema arabicum HOM05D005459 ORTHO05D006751 2.7e-60 236.5 301 45.8
Zm00001eb410070 Zea mays HOM05D005459 ORTHO05D006751 2.5e-58 229.9 305 44.9
vmacro20553 Vaccinium macrocarpon HOM05D005459 ORTHO05D006751 5.5e-53 212.2 230 52.2
Gohir.A12G251800 Gossypium hirsutum HOM05D005459 ORTHO05D006751 3.0e-51 206.5 156 64.7
Ca_12679_v3 Cicer arietinum L. HOM05D005459 ORTHO05D006751 1.3e-49 201.1 305 43.3
CARHR213570 Cardamine hirsuta HOM05D005459 ORTHO05D006751 2.8e-49 199.9 200 57.5
AUR62019336 Chenopodium quinoa HOM05D005459 ORTHO05D006751 6.3e-49 198.7 321 41.1
Medtr7g100940 Medicago truncatula HOM05D005459 ORTHO05D006751 5.1e-43 179.1 140 62.9
Os12g0623800 Oryza sativa ssp. japonica HOM05D005459 ORTHO05D006751 9.7e-42 174.9 239 45.6
MELO3C026934.2 Cucumis melo HOM05D005459 ORTHO05D006751 3.1e-40 169.9 140 62.1
Ah.13g069860 Amaranthus hybridus HOM05D005459 ORTHO05D006751 1.5e-39 167.5 141 57.4
Mapoly0084s0006 Marchantia polymorpha HOM05D005459 ORTHO05D006751 2.7e-36 156.8 293 38.6
SMO118G0218 Selaginella moellendorffii HOM05D005459 ORTHO05D006751 1.4e-35 154.5 295 35.3
Actinidia31865 Actinidia chinensis HOM05D005459 ORTHO05D006751 4.8e-33 146.0 271 41.0
AagrBONN_evm.TU.Sc2ySwM_117.3837 Anthoceros agrestis HOM05D005459 ORTHO05D006751 5.3e-32 142.5 203 43.8
Pp3c1_19310 Physcomitrium patens HOM05D005459 ORTHO05D006751 6.9e-32 142.1 231 37.2
Sabra15G0016700 Salix brachista HOM05D005459 ORTHO05D006751 7.7e-31 138.7 157 53.5
SEGI_13502 Sequoiadendron giganteum HOM05D005459 ORTHO05D006751 2.9e-30 136.7 206 39.3
Ah.13g069840 Amaranthus hybridus HOM05D005459 ORTHO05D006751 4.7e-28 129.4 162 48.1
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 5.7e-26 122.5 153 45.1
Hma1.2p1_1655F.1_g295920 Hydrangea macrophylla HOM05D005459 ORTHO05D006751 7.4e-26 122.1 96 60.4
CARHR289170 Cardamine hirsuta HOM05D005459 ORTHO05D006751 3.5e-23 113.2 86 67.4
Glyma.14G160851 Glycine max HOM05D005459 ORTHO05D006751 1.5e-21 107.8 160 45.0
TAR629G0401 Trochodendron aralioides HOM05D005459 ORTHO05D006751 1.2e-20 104.8 64 76.6
SEGI_05543 Sequoiadendron giganteum HOM05D005459 ORTHO05D006751 2.7e-20 103.6 99 52.5
Glyma.14G160900 Glycine max HOM05D005459 ORTHO05D006751 2.3e-19 100.5 76 60.5
Medtr7g100937 Medicago truncatula HOM05D005459 ORTHO05D006751 4.0e-19 99.8 149 43.0
CARHR213890 Cardamine hirsuta HOM05D005459 ORTHO05D006751 3.8e-14 83.2 83 53.0
CARHR288690 Cardamine hirsuta HOM05D005459 ORTHO05D006751 3.2e-13 80.1 98 48.0
Cre03.g176800 Chlamydomonas reinhardtii HOM05D005459 ORTHO05D006751 2.6e-10 70.5 202 30.2
BraA03t13584Z Brassica rapa HOM05D005459 ORTHO05D006751 3.7e-09 66.6 82 47.6
PRCOL_00002571 Prasinoderma coloniale HOM05D005459 ORTHO05D006751 1.6e-07 61.2 264 26.1


User provided reference genes

Program Settings