Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35860 Coffea canephora HOM05D003297 ORTHO05D004027 5.7e-55 217.2 103 100.0
Cc05_g01780 Coffea canephora HOM05D003297 ORTHO05D004027 1.8e-40 169.1 81 100.0
Cc05_g01790 Coffea canephora HOM05D003297 ORTHO05D004027 1.8e-40 169.1 81 100.0
Lsat_1_v5_gn_0_14320 Lactuca sativa HOM05D003297 ORTHO05D004027 6.0e-36 154.1 81 90.1
Manes.17G106000 Manihot esculenta HOM05D003297 ORTHO05D004027 1.0e-35 153.3 81 88.9
HanXRQChr17g0550191 Helianthus annuus HOM05D003297 ORTHO05D004027 1.3e-35 152.9 81 88.9
unitig_0.g1941 Utricularia gibba HOM05D003297 ORTHO05D004027 1.7e-35 152.5 81 87.7
CSS0005089 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.0e-35 151.8 83 89.2
Lj7A608T45 Lonicera japonica HOM05D003297 ORTHO05D004027 3.0e-35 151.8 83 89.2
Psat1g161760 Pisum sativum HOM05D003297 ORTHO05D004027 3.0e-35 151.8 81 86.4
Lj1g0013881 Lotus japonicus HOM05D003297 ORTHO05D004027 5.1e-35 151.0 81 87.7
Lsat_1_v5_gn_2_94421 Lactuca sativa HOM05D003297 ORTHO05D004027 6.6e-35 150.6 81 87.7
MSTRG.3093 Avicennia marina HOM05D003297 ORTHO05D004027 8.6e-35 150.2 81 86.4
CSS0009984 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 8.6e-35 150.2 83 88.0
CSS0027121 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 8.6e-35 150.2 83 88.0
Dinv25678 Davidia involucrata HOM05D003297 ORTHO05D004027 1.9e-34 149.1 83 88.0
Gohir.D04G078900 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.9e-34 149.1 81 85.2
Sc03g0006810 Simmondsia chinensis HOM05D003297 ORTHO05D004027 1.9e-34 149.1 81 85.2
Ah.16g107000 Amaranthus hybridus HOM05D003297 ORTHO05D004027 3.3e-34 148.3 81 85.2
CiPaw.03G052300 Carya illinoinensis HOM05D003297 ORTHO05D004027 3.3e-34 148.3 83 85.5
AUR62001824 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.3e-34 148.3 81 85.2
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.3e-34 148.3 81 85.2
Gohir.A05G340500 Gossypium hirsutum HOM05D003297 ORTHO05D004027 4.3e-34 147.9 81 84.0
Gorai.012G088800 Gossypium raimondii HOM05D003297 ORTHO05D004027 4.3e-34 147.9 81 84.0
Gorai.006G040100 Gossypium raimondii HOM05D003297 ORTHO05D004027 5.6e-34 147.5 81 85.2
Duzib147G0281 Durio zibethinus HOM05D003297 ORTHO05D004027 7.3e-34 147.1 82 85.4
arahy.Tifrunner.gnm1.ann1.G51SBL Arachis hypogaea HOM05D003297 ORTHO05D004027 9.5e-34 146.7 81 85.2
PGR083G1628 Punica granatum HOM05D003297 ORTHO05D004027 1.2e-33 146.4 83 85.5
vmacro05937 Vaccinium macrocarpon HOM05D003297 ORTHO05D004027 1.2e-33 146.4 81 86.4
Cpa.g.sc130.8 Carica papaya HOM05D003297 ORTHO05D004027 1.6e-33 146.0 81 85.2
Hund18929 Selenicereus undatus HOM05D003297 ORTHO05D004027 2.8e-33 145.2 81 86.4
THA.LOC104822413 Tarenaya hassleriana HOM05D003297 ORTHO05D004027 2.8e-33 145.2 83 84.3
Oeu058767.1 Olea europaea HOM05D003297 ORTHO05D004027 4.7e-33 144.4 81 85.2
QL02p072446 Quercus lobata HOM05D003297 ORTHO05D004027 4.7e-33 144.4 83 83.1
CDE07G1941 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 6.2e-33 144.1 83 81.9
DCAR_021763 Daucus carota HOM05D003297 ORTHO05D004027 6.2e-33 144.1 81 85.2
Nn3g16636 Nelumbo nucifera HOM05D003297 ORTHO05D004027 6.2e-33 144.1 83 83.1
arahy.Tifrunner.gnm1.ann1.5QR84K Arachis hypogaea HOM05D003297 ORTHO05D004027 8.1e-33 143.7 81 84.0
Cfa007254 Carpinus fangiana HOM05D003297 ORTHO05D004027 8.1e-33 143.7 83 83.1
Lj4g0023257 Lotus japonicus HOM05D003297 ORTHO05D004027 8.1e-33 143.7 81 84.0
CDE04G3082 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 1.1e-32 143.3 83 80.7
Haze_14833 Corylus avellana HOM05D003297 ORTHO05D004027 1.1e-32 143.3 83 83.1
Atru.chr6.2513 Acer truncatum HOM05D003297 ORTHO05D004027 1.4e-32 142.9 83 84.3
Actinidia38211 Actinidia chinensis HOM05D003297 ORTHO05D004027 1.8e-32 142.5 83 83.1
Duzib264G0931 Durio zibethinus HOM05D003297 ORTHO05D004027 2.3e-32 142.1 81 82.7
Medtr2g034610 Medicago truncatula HOM05D003297 ORTHO05D004027 3.1e-32 141.7 81 81.5
TAR371G0644 Trochodendron aralioides HOM05D003297 ORTHO05D004027 4.0e-32 141.4 83 81.9
Aqoxy3G01473 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 6.8e-32 140.6 83 79.5
Glyma.12G242000 Glycine max HOM05D003297 ORTHO05D004027 8.9e-32 140.2 81 84.0
ECA246G0154 Erigeron canadensis HOM05D003297 ORTHO05D004027 1.5e-31 139.4 77 87.0
Glyma.19G075600 Glycine max HOM05D003297 ORTHO05D004027 1.5e-31 139.4 81 84.0
Hma1.2p1_0172F.1_g076190 Hydrangea macrophylla HOM05D003297 ORTHO05D004027 1.5e-31 139.4 85 83.5
MD17G1015400 Malus domestica HOM05D003297 ORTHO05D004027 1.5e-31 139.4 83 80.7
Potri.001G334100 Populus trichocarpa HOM05D003297 ORTHO05D004027 1.5e-31 139.4 90 80.0
HanXRQChr17g0534581 Helianthus annuus HOM05D003297 ORTHO05D004027 2.6e-31 138.7 75 86.7
PSO478G3807 Papaver somniferum HOM05D003297 ORTHO05D004027 2.6e-31 138.7 83 79.5
Phvul.010G007000 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 2.6e-31 138.7 81 81.5
MD09G1015300 Malus domestica HOM05D003297 ORTHO05D004027 3.4e-31 138.3 83 79.5
TWI36G1507 Tripterygium wilfordii HOM05D003297 ORTHO05D004027 3.4e-31 138.3 83 79.5
CARHR199100 Cardamine hirsuta HOM05D003297 ORTHO05D004027 4.4e-31 137.9 83 81.9
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 4.4e-31 137.9 81 80.2
Phvul.004G055600 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 4.4e-31 137.9 81 80.2
FAN14G1208 Fragaria x ananassa HOM05D003297 ORTHO05D004027 5.8e-31 137.5 82 79.3
MBI15_g24202_MAGBIO Magnolia biondii HOM05D003297 ORTHO05D004027 5.8e-31 137.5 83 80.7
PSO675G2052 Papaver somniferum HOM05D003297 ORTHO05D004027 5.8e-31 137.5 83 78.3
Prupe.3G302500 Prunus persica HOM05D003297 ORTHO05D004027 5.8e-31 137.5 83 80.7
Prupe.6G027300 Prunus persica HOM05D003297 ORTHO05D004027 5.8e-31 137.5 83 80.7
Ciclev10016373m.g Citrus clementina HOM05D003297 ORTHO05D004027 7.5e-31 137.1 83 81.9
COL.COLO4_08765 Corchorus olitorius HOM05D003297 ORTHO05D004027 7.5e-31 137.1 81 80.2
PSO541G1060 Papaver somniferum HOM05D003297 ORTHO05D004027 7.5e-31 137.1 83 78.3
arahy.Tifrunner.gnm1.ann1.PXFG7S Arachis hypogaea HOM05D003297 ORTHO05D004027 9.9e-31 136.7 81 80.2
ClCG08G000860 Citrullus lanatus HOM05D003297 ORTHO05D004027 9.9e-31 136.7 83 80.7
Sabra16G0215200 Salix brachista HOM05D003297 ORTHO05D004027 1.3e-30 136.3 83 83.1
Sed0027775 Sechium edule HOM05D003297 ORTHO05D004027 1.3e-30 136.3 83 81.9
Gohir.D09G035200 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.7e-30 136.0 81 80.2
TPR.G5775 Trifolium pratense HOM05D003297 ORTHO05D004027 1.7e-30 136.0 81 79.0
Nn1g00668 Nelumbo nucifera HOM05D003297 ORTHO05D004027 2.9e-30 135.2 83 80.7
CsaV3_3G044040 Cucumis sativus L. HOM05D003297 ORTHO05D004027 3.7e-30 134.8 83 78.3
Lalb_Chr06g0174311 Lupinus albus HOM05D003297 ORTHO05D004027 4.9e-30 134.4 81 77.8
Gohir.A09G034300 Gossypium hirsutum HOM05D003297 ORTHO05D004027 8.3e-30 133.7 81 77.8
Hund04990 Selenicereus undatus HOM05D003297 ORTHO05D004027 1.1e-29 133.3 81 79.0
Thecc.04G030000 Theobroma cacao HOM05D003297 ORTHO05D004027 1.1e-29 133.3 81 77.8
Migut.D01746 Erythranthe guttata HOM05D003297 ORTHO05D004027 1.4e-29 132.9 81 77.8
SGA_v2.0_scaffold18G08223 Striga asiatica HOM05D003297 ORTHO05D004027 1.9e-29 132.5 81 80.2
SGA_v2.0_scaffold481G52325 Striga asiatica HOM05D003297 ORTHO05D004027 1.9e-29 132.5 82 79.3
MELO3C022190.2 Cucumis melo HOM05D003297 ORTHO05D004027 2.4e-29 132.1 85 76.5
Migut.H00013 Erythranthe guttata HOM05D003297 ORTHO05D004027 2.4e-29 132.1 81 77.8
Solyc10g078830.2 Solanum lycopersicum HOM05D003297 ORTHO05D004027 3.2e-29 131.7 83 77.1
Sopen10g029470 Solanum pennellii HOM05D003297 ORTHO05D004027 3.2e-29 131.7 83 77.1
PGSC0003DMG400011416 Solanum tuberosum HOM05D003297 ORTHO05D004027 3.2e-29 131.7 83 77.1
Nitab4.5_0004643g0030 Nicotiana tabacum HOM05D003297 ORTHO05D004027 4.1e-29 131.3 83 78.3
FAN05G2899 Fragaria x ananassa HOM05D003297 ORTHO05D004027 7.1e-29 130.6 82 75.6
arahy.Tifrunner.gnm1.ann1.IZLP0D Arachis hypogaea HOM05D003297 ORTHO05D004027 9.2e-29 130.2 81 76.5
AT5G14240 Arabidopsis thaliana HOM05D003297 ORTHO05D004027 1.2e-28 129.8 83 78.3
AL6G24920 Arabidopsis lyrata HOM05D003297 ORTHO05D004027 1.6e-28 129.4 83 78.3
Os01g0184800 Oryza sativa ssp. japonica HOM05D003297 ORTHO05D004027 1.6e-28 129.4 81 71.6
Aa31LG11G15030 Aethionema arabicum HOM05D003297 ORTHO05D004027 2.1e-28 129.0 83 77.1
Actinidia30893 Actinidia chinensis HOM05D003297 ORTHO05D004027 2.7e-28 128.6 83 77.1
RcHm_v2.0_Chr3g0477231 Rosa chinensis HOM05D003297 ORTHO05D004027 2.7e-28 128.6 83 74.7
RcHm_v2.0_Chr3g0477241 Rosa chinensis HOM05D003297 ORTHO05D004027 2.7e-28 128.6 83 74.7
Zm00001eb121870 Zea mays HOM05D003297 ORTHO05D004027 4.6e-28 127.9 81 72.8
BcaB01g05299 Brassica carinata HOM05D003297 ORTHO05D004027 6.0e-28 127.5 83 78.3
Zm00001eb269870 Zea mays HOM05D003297 ORTHO05D004027 7.8e-28 127.1 81 72.8
C03p07500 Brassica napus HOM05D003297 ORTHO05D004027 1.3e-27 126.3 83 77.1
Eucgr.J02308 Eucalyptus grandis HOM05D003297 ORTHO05D004027 1.3e-27 126.3 83 78.3
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.7e-27 125.9 81 76.5
GSVIVG01001822001 Vitis vinifera HOM05D003297 ORTHO05D004027 1.7e-27 125.9 83 77.1
Peaxi162Scf00304g00127 Petunia axillaris HOM05D003297 ORTHO05D004027 3.0e-27 125.2 70 84.3
A03p06500 Brassica napus HOM05D003297 ORTHO05D004027 3.9e-27 124.8 83 74.7
BraA03t09982Z Brassica rapa HOM05D003297 ORTHO05D004027 3.9e-27 124.8 83 74.7
A10p24230 Brassica napus HOM05D003297 ORTHO05D004027 5.1e-27 124.4 70 84.3
BraA10t44488Z Brassica rapa HOM05D003297 ORTHO05D004027 5.1e-27 124.4 70 84.3
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 5.1e-27 124.4 82 76.8
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 5.1e-27 124.4 82 76.8
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.1e-27 124.4 82 76.8
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.1e-27 124.4 82 76.8
Rhsim10G0008800 Rhododendron simsii HOM05D003297 ORTHO05D004027 5.1e-27 124.4 81 74.1
Sp6g29790 Schrenkiella parvula HOM05D003297 ORTHO05D004027 5.1e-27 124.4 83 74.7
BcaB01g06337 Brassica carinata HOM05D003297 ORTHO05D004027 1.9e-26 122.5 83 73.5
C09p62920 Brassica napus HOM05D003297 ORTHO05D004027 1.9e-26 122.5 70 82.9
BolC9t59129H Brassica oleracea HOM05D003297 ORTHO05D004027 1.9e-26 122.5 70 82.9
SEGI_15348 Sequoiadendron giganteum HOM05D003297 ORTHO05D004027 1.9e-26 122.5 83 74.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 3.3e-26 121.7 81 77.8
Peaxi162Scf00003g04521 Petunia axillaris HOM05D003297 ORTHO05D004027 3.3e-26 121.7 70 81.4
BcaC04g19050 Brassica carinata HOM05D003297 ORTHO05D004027 4.3e-26 121.3 70 82.9
Rhsim06G0126200 Rhododendron simsii HOM05D003297 ORTHO05D004027 4.3e-26 121.3 82 74.4
PSO541G1735 Papaver somniferum HOM05D003297 ORTHO05D004027 7.3e-26 120.6 77 76.6
EL10Ac9g22681 Beta vulgaris HOM05D003297 ORTHO05D004027 9.5e-26 120.2 71 77.5
BcaB08g36969 Brassica carinata HOM05D003297 ORTHO05D004027 9.5e-26 120.2 70 81.4
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 9.5e-26 120.2 80 76.2
Nitab4.5_0000105g0150 Nicotiana tabacum HOM05D003297 ORTHO05D004027 1.6e-25 119.4 74 78.4
Thhalv10014458m.g Eutrema salsugineum HOM05D003297 ORTHO05D004027 2.1e-25 119.0 70 78.6
C02p06630 Brassica napus HOM05D003297 ORTHO05D004027 2.8e-25 118.6 70 80.0
Carub.0006s1244 Capsella rubella HOM05D003297 ORTHO05D004027 2.8e-25 118.6 70 80.0
AagrBONN_evm.TU.Sc2ySwM_368.1649 Anthoceros agrestis HOM05D003297 ORTHO05D004027 8.1e-25 117.1 83 69.9
BolC3t13251H Brassica oleracea HOM05D003297 ORTHO05D004027 1.1e-24 116.7 83 72.3
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 1.4e-24 116.3 91 64.8
ATR1136G208 Amborella trichopoda HOM05D003297 ORTHO05D004027 2.4e-24 115.5 84 69.0
CANSAT64G0772 Cannabis sativa HOM05D003297 ORTHO05D004027 4.0e-24 114.8 69 76.8
HanXRQChr15g0474721 Helianthus annuus HOM05D003297 ORTHO05D004027 6.8e-24 114.0 79 72.2
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 1.2e-23 113.2 82 72.0
HPP92_005181 Vanilla planifolia HOM05D003297 ORTHO05D004027 1.2e-23 113.2 81 69.1
Nitab4.5_0003600g0020 Nicotiana tabacum HOM05D003297 ORTHO05D004027 4.4e-23 111.3 77 74.0
Mapoly0059s0038 Marchantia polymorpha HOM05D003297 ORTHO05D004027 7.6e-23 110.5 83 66.3
SMO147G0291 Selaginella moellendorffii HOM05D003297 ORTHO05D004027 2.9e-22 108.6 84 65.5
Nn1g00078 Nelumbo nucifera HOM05D003297 ORTHO05D004027 1.6e-20 102.8 80 67.5
Pp3c2_20640 Physcomitrium patens HOM05D003297 ORTHO05D004027 5.1e-19 97.8 79 63.3
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.9e-18 95.9 59 76.3
CSS0031371 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.6e-17 91.7 83 62.7
Cre06.g291900 Chlamydomonas reinhardtii HOM05D003297 ORTHO05D004027 1.1e-16 90.1 81 54.3
RcHm_v2.0_Chr1g0359651 Rosa chinensis HOM05D003297 ORTHO05D004027 1.1e-16 90.1 54 75.9
RcHm_v2.0_Chr2g0174741 Rosa chinensis HOM05D003297 ORTHO05D004027 3.8e-14 81.6 57 63.2
FAN01G2972 Fragaria x ananassa HOM05D003297 ORTHO05D004027 8.4e-14 80.5 57 73.7
FAN06G1012 Fragaria x ananassa HOM05D003297 ORTHO05D004027 4.2e-13 78.2 71 59.2
FAN10G0806 Fragaria x ananassa HOM05D003297 ORTHO05D004027 5.4e-13 77.8 54 74.1
Nn6g34769 Nelumbo nucifera HOM05D003297 ORTHO05D004027 5.4e-13 77.8 82 61.0
SGA_v2.0_scaffold857G53675 Striga asiatica HOM05D003297 ORTHO05D004027 1.2e-12 76.6 50 76.0
FAN06G2104 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.1e-12 75.9 71 57.7
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 1.1e-10 70.1 31 93.5
Nn1g00077 Nelumbo nucifera HOM05D003297 ORTHO05D004027 9.6e-10 67.0 32 90.6
Potri.017G066200 Populus trichocarpa HOM05D003297 ORTHO05D004027 1.8e-08 62.8 66 60.6
Lsat_1_v5_gn_2_17820 Lactuca sativa HOM05D003297 ORTHO05D004027 6.9e-08 60.8 38 76.3
PRCOL_00004862 Prasinoderma coloniale HOM05D003297 ORTHO05D004027 3.4e-07 58.5 84 45.2
CARHR103230 Cardamine hirsuta HOM05D003297 ORTHO05D004027 7.6e-07 57.4 43 72.1
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 6.4e-06 54.3 49 57.1


User provided reference genes

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