Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g12200 Coffea canephora HOM05D006915 ORTHO05D008716 2.4e-59 231.9 109 100.0
Cc02_g15720 Coffea canephora HOM05D006915 ORTHO05D008716 2.4e-59 231.9 109 100.0
Cc06_g14040 Coffea canephora HOM05D006915 ORTHO05D008716 2.4e-59 231.9 109 100.0
Cc10_g12510 Coffea canephora HOM05D006915 ORTHO05D008716 2.4e-59 231.9 109 100.0
Cc02_g34410 Coffea canephora HOM05D006915 ORTHO05D008716 1.8e-51 205.7 101 95.0
Sabra13G0011700 Salix brachista HOM05D006915 ORTHO05D008716 2.6e-37 158.7 101 71.3
Potri.013G013000 Populus trichocarpa HOM05D006915 ORTHO05D008716 9.7e-37 156.8 101 69.3
CAN.G1273.37 Capsicum annuum HOM05D006915 ORTHO05D008716 1.3e-36 156.4 101 69.3
Solyc01g099980.4 Solanum lycopersicum HOM05D006915 ORTHO05D008716 4.8e-36 154.5 101 67.3
Sopen01g043500 Solanum pennellii HOM05D006915 ORTHO05D008716 4.8e-36 154.5 101 67.3
Duzib106G0016 Durio zibethinus HOM05D006915 ORTHO05D008716 6.3e-36 154.1 101 71.3
Peaxi162Scf00037g01620 Petunia axillaris HOM05D006915 ORTHO05D008716 8.2e-36 153.7 101 66.3
Cpa.g.sc48.116 Carica papaya HOM05D006915 ORTHO05D008716 1.1e-35 153.3 101 66.3
PGSC0003DMG400024769 Solanum tuberosum HOM05D006915 ORTHO05D008716 1.4e-35 152.9 101 66.3
Haze_04112 Corylus avellana HOM05D006915 ORTHO05D008716 5.3e-35 151.0 101 66.3
CiPaw.07G024000 Carya illinoinensis HOM05D006915 ORTHO05D008716 7.0e-35 150.6 101 66.3
Nitab4.5_0006239g0010 Nicotiana tabacum HOM05D006915 ORTHO05D008716 1.2e-34 149.8 101 67.3
Manes.08G115100 Manihot esculenta HOM05D006915 ORTHO05D008716 2.0e-34 149.1 102 66.7
Dinv30841 Davidia involucrata HOM05D006915 ORTHO05D008716 5.9e-34 147.5 101 66.3
Gorai.007G302300 Gossypium raimondii HOM05D006915 ORTHO05D008716 5.9e-34 147.5 101 63.4
Nitab4.5_0006355g0020 Nicotiana tabacum HOM05D006915 ORTHO05D008716 5.9e-34 147.5 101 66.3
CSS0012162 Camellia sinensis var. sinensis HOM05D006915 ORTHO05D008716 7.7e-34 147.1 101 68.3
Atru.chr2.96 Acer truncatum HOM05D006915 ORTHO05D008716 1.3e-33 146.4 101 66.3
arahy.Tifrunner.gnm1.ann1.7FV96H Arachis hypogaea HOM05D006915 ORTHO05D008716 1.3e-33 146.4 101 66.3
CSS0006217 Camellia sinensis var. sinensis HOM05D006915 ORTHO05D008716 1.7e-33 146.0 101 68.3
Prupe.6G318400 Prunus persica HOM05D006915 ORTHO05D008716 1.7e-33 146.0 89 70.8
Hma1.2p1_0472F.1_g159690 Hydrangea macrophylla HOM05D006915 ORTHO05D008716 2.2e-33 145.6 102 63.7
Ciclev10003191m.g Citrus clementina HOM05D006915 ORTHO05D008716 2.9e-33 145.2 101 65.3
Lj5g0027210 Lotus japonicus HOM05D006915 ORTHO05D008716 3.8e-33 144.8 101 65.3
Actinidia16833 Actinidia chinensis HOM05D006915 ORTHO05D008716 6.5e-33 144.1 101 64.4
TWI56G0967 Tripterygium wilfordii HOM05D006915 ORTHO05D008716 6.5e-33 144.1 93 72.0
Eucgr.H03259 Eucalyptus grandis HOM05D006915 ORTHO05D008716 8.5e-33 143.7 101 63.4
PGR031G2780 Punica granatum HOM05D006915 ORTHO05D008716 8.5e-33 143.7 102 62.7
Medtr1g083540 Medicago truncatula HOM05D006915 ORTHO05D008716 1.1e-32 143.3 101 65.3
Gorai.004G238600 Gossypium raimondii HOM05D006915 ORTHO05D008716 3.2e-32 141.7 101 65.3
Lalb_Chr02g0148021 Lupinus albus HOM05D006915 ORTHO05D008716 4.2e-32 141.4 101 62.4
Duzib177G0174 Durio zibethinus HOM05D006915 ORTHO05D008716 7.2e-32 140.6 131 52.7
Glyma.10G150500 Glycine max HOM05D006915 ORTHO05D008716 2.1e-31 139.0 101 64.4
Oeu043329.1 Olea europaea HOM05D006915 ORTHO05D008716 2.1e-31 139.0 103 65.0
Actinidia35543 Actinidia chinensis HOM05D006915 ORTHO05D008716 2.7e-31 138.7 97 64.9
MD04G1197900 Malus domestica HOM05D006915 ORTHO05D008716 3.6e-31 138.3 90 68.9
Sed0020087 Sechium edule HOM05D006915 ORTHO05D008716 3.6e-31 138.3 88 67.0
Gohir.A08G101064 Gossypium hirsutum HOM05D006915 ORTHO05D008716 4.7e-31 137.9 101 63.4
Gohir.A08G208000 Gossypium hirsutum HOM05D006915 ORTHO05D008716 4.7e-31 137.9 101 63.4
Gohir.A08G208040 Gossypium hirsutum HOM05D006915 ORTHO05D008716 4.7e-31 137.9 101 63.4
VMungo0720G1812 Vigna mungo HOM05D006915 ORTHO05D008716 6.1e-31 137.5 101 63.4
QL03p019427 Quercus lobata HOM05D006915 ORTHO05D008716 1.4e-30 136.3 128 53.1
Rhsim07G0193700 Rhododendron simsii HOM05D006915 ORTHO05D008716 1.4e-30 136.3 98 65.3
Glyma.20G237900 Glycine max HOM05D006915 ORTHO05D008716 1.8e-30 136.0 101 63.4
CsaV3_1G038600 Cucumis sativus L. HOM05D006915 ORTHO05D008716 2.3e-30 135.6 88 67.0
TPR.G17725 Trifolium pratense HOM05D006915 ORTHO05D008716 2.3e-30 135.6 102 63.7
GSVIVG01031161001 Vitis vinifera HOM05D006915 ORTHO05D008716 2.3e-30 135.6 101 60.4
MELO3C015286.2 Cucumis melo HOM05D006915 ORTHO05D008716 3.0e-30 135.2 88 67.0
Migut.N02102 Erythranthe guttata HOM05D006915 ORTHO05D008716 3.0e-30 135.2 104 64.4
SalBow3G1180 Salvia bowleyana HOM05D006915 ORTHO05D008716 3.0e-30 135.2 103 62.1
ClCG03G017170 Citrullus lanatus HOM05D006915 ORTHO05D008716 5.2e-30 134.4 88 67.0
DCAR_014259 Daucus carota HOM05D006915 ORTHO05D008716 8.8e-30 133.7 101 59.4
TAR362G1305 Trochodendron aralioides HOM05D006915 ORTHO05D008716 2.6e-29 132.1 102 62.7
RcHm_v2.0_Chr3g0456361 Rosa chinensis HOM05D006915 ORTHO05D008716 3.4e-29 131.7 89 67.4
FvH4_6g06870 Fragaria vesca HOM05D006915 ORTHO05D008716 5.7e-29 131.0 99 61.6
FAN09G1271 Fragaria x ananassa HOM05D006915 ORTHO05D008716 5.7e-29 131.0 89 66.3
Ca_10149_v3 Cicer arietinum L. HOM05D006915 ORTHO05D008716 9.8e-29 130.2 90 66.7
FAN14G4333 Fragaria x ananassa HOM05D006915 ORTHO05D008716 1.7e-28 129.4 99 60.6
Lj5A352T44 Lonicera japonica HOM05D006915 ORTHO05D008716 2.2e-28 129.0 106 58.5
Sc16g0008720 Simmondsia chinensis HOM05D006915 ORTHO05D008716 3.7e-28 128.3 90 66.7
ECA234G4544 Erigeron canadensis HOM05D006915 ORTHO05D003955 4.8e-28 127.9 101 58.4
Aqoxy2G02881_Aqoxy2G02882 Aquilegia oxysepala HOM05D006915 ORTHO05D008716 4.1e-27 124.8 97 61.9
arahy.Tifrunner.gnm1.ann1.5J2W84 Arachis hypogaea HOM05D006915 ORTHO05D008716 1.2e-26 123.2 149 45.0
Nn3g21565 Nelumbo nucifera HOM05D006915 ORTHO05D008716 2.7e-26 122.1 91 61.5
Lsat_1_v5_gn_5_102040 Lactuca sativa HOM05D006915 ORTHO05D008716 2.9e-25 118.6 101 53.5
Hund21722 Selenicereus undatus HOM05D006915 ORTHO05D008716 2.9e-25 118.6 102 54.9
MBI18_g21802_MAGBIO Magnolia biondii HOM05D006915 ORTHO05D008716 3.8e-25 118.2 102 56.9
EL10Ac4g09887 Beta vulgaris HOM05D006915 ORTHO05D008716 6.5e-25 117.5 102 57.8
Ah.06g189960 Amaranthus hybridus HOM05D006915 ORTHO05D008716 2.5e-24 115.5 91 60.4
AL1G65780 Arabidopsis lyrata HOM05D006915 ORTHO05D008716 6.1e-23 110.9 88 60.2
BcaC09g49574 Brassica carinata HOM05D006915 ORTHO05D008716 8.0e-23 110.5 91 59.3
A01p27290 Brassica napus HOM05D006915 ORTHO05D008716 1.0e-22 110.2 91 59.3
C01p35060 Brassica napus HOM05D006915 ORTHO05D008716 1.0e-22 110.2 91 59.3
BolC1t03469H Brassica oleracea HOM05D006915 ORTHO05D008716 1.0e-22 110.2 91 59.3
BraA01t02866Z Brassica rapa HOM05D006915 ORTHO05D008716 2.3e-22 109.0 82 63.4
HanXRQChr10g0293511 Helianthus annuus HOM05D006915 ORTHO05D008716 3.0e-22 108.6 101 55.4
BcaB04g20154 Brassica carinata HOM05D006915 ORTHO05D008716 4.0e-22 108.2 82 63.4
HanXRQChr16g0513341 Helianthus annuus HOM05D006915 ORTHO05D008716 4.0e-22 108.2 101 46.5
AUR62000733 Chenopodium quinoa HOM05D006915 ORTHO05D008716 6.8e-22 107.5 102 53.9
Sp2g06680 Schrenkiella parvula HOM05D006915 ORTHO05D008716 6.8e-22 107.5 82 62.2
SGA_v2.0_scaffold81G26106 Striga asiatica HOM05D006915 ORTHO05D008716 6.8e-22 107.5 115 53.0
HPP92_010683 Vanilla planifolia HOM05D006915 ORTHO05D008716 8.9e-22 107.1 102 52.0
AUR62005232 Chenopodium quinoa HOM05D006915 ORTHO05D008716 1.5e-21 106.3 87 59.8
THA.LOC104805899 Tarenaya hassleriana HOM05D006915 ORTHO05D008716 1.5e-21 106.3 101 51.5
Thhalv10023302m.g Eutrema salsugineum HOM05D006915 ORTHO05D008716 2.0e-21 105.9 88 59.1
HPP92_010661 Vanilla planifolia HOM05D006915 ORTHO05D008716 2.0e-21 105.9 90 54.4
Carub.0002s0798 Capsella rubella HOM05D006915 ORTHO05D008716 7.5e-21 104.0 88 58.0
Aa31LG2G11650 Aethionema arabicum HOM05D006915 ORTHO05D008716 8.3e-20 100.5 101 49.5
PSO170G1420 Papaver somniferum HOM05D006915 ORTHO05D008716 9.2e-19 97.1 98 52.0
PSO407G0087 Papaver somniferum HOM05D006915 ORTHO05D008716 1.6e-18 96.3 98 51.0
COL.COLO4_10557 Corchorus olitorius HOM05D006915 ORTHO05D008716 1.0e-14 83.6 48 75.0
Pp3c25_8040 Physcomitrium patens HOM05D006915 ORTHO05D008716 4.0e-14 81.6 69 49.3
Thecc.05G316200 Theobroma cacao HOM05D006915 ORTHO05D008716 5.2e-14 81.3 41 85.4
Pp3c1_29600 Physcomitrium patens HOM05D006915 ORTHO05D008716 2.6e-13 79.0 69 50.7
ATR0693G163 Amborella trichopoda HOM05D006915 ORTHO05D008716 7.5e-13 77.4 73 47.9
Gohir.A11G269900 Gossypium hirsutum HOM05D006915 ORTHO05D008716 7.5e-13 77.4 41 80.5
Gohir.D11G280100 Gossypium hirsutum HOM05D006915 ORTHO05D008716 7.5e-13 77.4 41 80.5
Phvul.007G198300 Phaseolus vulgaris HOM05D006915 ORTHO05D008716 2.2e-12 75.9 41 82.9
Gohir.D08G224700 Gossypium hirsutum HOM05D006915 ORTHO05D008716 1.9e-11 72.8 41 80.5
Mapoly0209s0003 Marchantia polymorpha HOM05D006915 ORTHO05D008716 7.0e-11 70.9 69 46.4
Pp3c14_14700 Physcomitrium patens HOM05D006915 ORTHO05D008716 1.2e-10 70.1 69 42.0
Zm00001eb131470 Zea mays HOM05D006915 ORTHO05D008716 4.6e-10 68.2 44 68.2
Pp3c10_15350 Physcomitrium patens HOM05D000923 ORTHO05D000720 7.8e-10 67.4 88 36.4
Pp3c9_20110 Physcomitrium patens HOM05D006915 ORTHO05D008716 4.3e-08 61.6 73 38.4
AT1G56230 Arabidopsis thaliana HOM05D006915 ORTHO05D008716 5.6e-08 61.2 44 63.6


User provided reference genes

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