Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 6.8e-55 217.6 160 100.0
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 1.7e-37 159.8 157 80.3
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 6.4e-37 157.9 158 77.2
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 8.4e-37 157.5 160 76.2
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 1.1e-36 157.1 160 77.5
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 1.4e-36 156.8 158 77.2
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 4.2e-36 155.2 157 78.3
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 7.1e-36 154.5 159 76.1
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 4.6e-35 151.8 160 77.5
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 6.0e-35 151.4 157 77.7
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 1.3e-34 150.2 162 76.5
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 1.3e-34 150.2 160 76.2
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 1.7e-34 149.8 160 71.2
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 1.7e-34 149.8 158 77.8
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 2.3e-34 149.4 158 74.1
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 3.0e-34 149.1 160 77.5
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 8.7e-34 147.5 162 76.5
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 1.5e-33 146.7 162 76.5
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 3.3e-33 145.6 158 75.3
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 4.3e-33 145.2 160 75.6
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 7.3e-33 144.4 162 74.1
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 9.6e-33 144.1 160 73.1
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 1.3e-32 143.7 160 75.6
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 2.8e-32 142.5 160 75.6
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 3.6e-32 142.1 162 75.9
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 1.4e-31 140.2 160 71.9
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.8e-31 139.8 138 81.2
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 4.0e-31 138.7 162 76.5
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 5.3e-31 138.3 138 80.4
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 9.0e-31 137.5 143 75.5
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 2.0e-30 136.3 160 73.1
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 2.0e-30 136.3 160 74.4
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 3.4e-30 135.6 157 75.2
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 4.5e-30 135.2 157 73.9
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 3.8e-29 132.1 160 70.0
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 4.9e-29 131.7 157 73.9
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 1.4e-28 130.2 160 72.5
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 1.9e-28 129.8 162 73.5
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 2.4e-28 129.4 162 74.1
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 2.4e-28 129.4 162 74.1
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 2.4e-28 129.4 162 72.2
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 5.4e-28 128.3 157 73.2
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 5.4e-28 128.3 123 88.6
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 2.1e-27 126.3 162 70.4
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 2.7e-27 125.9 180 64.4
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 3.5e-27 125.6 158 72.8
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 6.0e-27 124.8 160 72.5
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 6.0e-27 124.8 160 71.9
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 1.8e-26 123.2 157 70.1
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 3.0e-26 122.5 151 73.5
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 6.7e-26 121.3 157 73.2
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 8.7e-26 120.9 143 74.8
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 8.7e-26 120.9 155 71.6
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 1.1e-25 120.6 160 68.1
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 1.5e-25 120.2 160 68.1
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 2.5e-25 119.4 159 70.4
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 2.5e-25 119.4 160 68.1
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 5.6e-25 118.2 157 68.8
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 9.6e-25 117.5 163 68.7
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 9.6e-25 117.5 161 67.1
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 9.6e-25 117.5 157 68.2
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 1.3e-24 117.1 150 74.0
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 3.7e-24 115.5 157 67.5
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 6.2e-24 114.8 160 67.5
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 6.2e-24 114.8 160 71.9
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 8.1e-24 114.4 160 67.5
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 8.1e-24 114.4 160 67.5
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 8.1e-24 114.4 151 69.5
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 1.4e-23 113.6 160 67.5
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 1.4e-23 113.6 160 69.4
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 1.8e-23 113.2 160 68.1
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 1.8e-23 113.2 160 66.2
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 1.8e-23 113.2 157 72.0
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 2.4e-23 112.8 158 70.9
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 2.4e-23 112.8 158 70.3
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.5e-22 110.2 160 65.6
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 4.5e-22 108.6 160 65.0
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 5.8e-22 108.2 161 67.1
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 5.8e-22 108.2 126 81.0
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 7.6e-22 107.8 120 83.3
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 7.6e-22 107.8 157 67.5
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 7.6e-22 107.8 120 83.3
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 7.6e-22 107.8 124 79.8
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 9.9e-22 107.5 160 64.4
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 2.2e-21 106.3 143 69.2
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 2.2e-21 106.3 130 76.9
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 2.2e-21 106.3 164 70.7
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 6.4e-21 104.8 157 66.9
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 1.9e-20 103.2 116 82.8
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 2.5e-20 102.8 160 65.0
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 2.5e-20 102.8 160 63.8
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 7.1e-20 101.3 126 77.8
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 1.2e-19 100.5 161 63.4
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 2.7e-19 99.4 89 78.7
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 3.5e-19 99.0 155 41.3
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 6.0e-19 98.2 160 63.8
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 1.0e-18 97.4 154 63.0
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 1.8e-18 96.7 161 62.7
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 1.8e-18 96.7 67 73.1
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 2.3e-18 96.3 160 65.0
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 3.3e-17 92.4 156 60.9
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 7.4e-17 91.3 160 63.8
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 9.6e-17 90.9 130 73.8
Actinidia04818 Actinidia chinensis HOM05D007161 ORTHO05D009103 2.6e-14 82.8 119 72.3
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 3.4e-14 82.4 130 63.1
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 7.6e-14 81.3 111 57.7
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 1.9e-12 76.6 150 61.3
unitig_0.g5 Utricularia gibba HOM05D000887 ORTHO05D000908 6.1e-11 71.6 116 71.6
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 1.3e-10 70.5 67 56.7


User provided reference genes

Program Settings