Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 3.5e-52 208.0 105 100.0
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 7.2e-45 183.7 120 79.2
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 2.3e-43 178.7 120 79.2
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 1.7e-41 172.6 118 77.1
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 1.4e-40 169.5 115 78.3
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 2.2e-38 162.2 117 75.2
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 1.9e-37 159.1 118 72.0
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 7.2e-37 157.1 117 71.8
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 2.7e-36 155.2 117 70.9
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 2.7e-36 155.2 117 70.9
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 1.0e-35 153.3 96 84.4
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 1.0e-35 153.3 96 84.4
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 1.5e-34 149.4 126 66.7
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 2.0e-34 149.1 117 69.2
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 2.0e-34 149.1 117 69.2
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 3.1e-32 141.7 125 65.6
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 1.4e-27 126.3 104 66.3
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 6.7e-27 124.0 105 66.7
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 2.2e-25 119.0 104 63.5
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 6.3e-25 117.5 69 85.5
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 1.8e-24 115.9 121 56.2
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 1.8e-24 115.9 105 62.9
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 2.4e-24 115.5 70 82.9
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 3.1e-24 115.2 101 66.3
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 9.1e-24 113.6 127 53.5
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 9.1e-24 113.6 102 61.8
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 1.6e-23 112.8 102 61.8
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 1.6e-23 112.8 120 57.5
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 2.0e-23 112.5 101 63.4
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 2.7e-23 112.1 103 63.1
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 3.5e-23 111.7 92 69.6
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 4.5e-23 111.3 101 63.4
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 4.5e-23 111.3 97 62.9
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 5.9e-23 110.9 82 73.2
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 1.7e-22 109.4 124 55.6
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 2.9e-22 108.6 110 59.1
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 2.9e-22 108.6 109 56.9
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 5.0e-22 107.8 73 75.3
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 6.5e-22 107.5 86 67.4
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.1e-21 106.7 80 71.2
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 1.5e-21 106.3 105 60.0
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 7.2e-21 104.0 81 66.7
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 7.2e-21 104.0 96 63.5
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 1.2e-20 103.2 110 57.3
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 2.1e-20 102.4 95 62.1
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 2.7e-20 102.1 94 61.7
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 3.6e-20 101.7 108 58.3
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 3.6e-20 101.7 88 65.9
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 4.7e-20 101.3 111 57.7
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.7e-20 101.3 111 57.7
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.7e-20 101.3 111 58.6
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 1.0e-19 100.1 88 61.4
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 1.0e-19 100.1 75 72.0
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 1.8e-19 99.4 99 60.6
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 1.8e-19 99.4 98 62.2
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 3.0e-19 98.6 132 46.2
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.0e-19 98.6 132 46.2
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 3.0e-19 98.6 109 55.0
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 5.2e-19 97.8 94 60.6
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 6.8e-19 97.4 104 53.8
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 8.8e-19 97.1 115 51.3
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 8.8e-19 97.1 126 48.4
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 1.2e-18 96.7 98 58.2
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 2.0e-18 95.9 77 67.5
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 4.4e-18 94.7 95 56.8
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 5.7e-18 94.4 102 54.9
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 5.7e-18 94.4 106 50.9
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 5.7e-18 94.4 99 58.6
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 9.8e-18 93.6 103 52.4
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 2.2e-17 92.4 90 61.1
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 2.2e-17 92.4 73 67.1
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 2.2e-17 92.4 83 60.2
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 8.3e-17 90.5 78 60.3
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 1.1e-16 90.1 103 50.5
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 5.4e-16 87.8 103 49.5
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 7.0e-16 87.4 78 62.8
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 9.1e-16 87.0 97 54.6
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 9.1e-16 87.0 80 65.0
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 1.2e-15 86.7 100 56.0
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.2e-15 86.7 82 58.5
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 1.2e-15 86.7 131 46.6
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 3.5e-15 85.1 88 59.1
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 7.7e-15 84.0 75 56.0
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.3e-14 83.2 63 68.3
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.3e-14 83.2 97 51.5
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 3.8e-14 81.6 97 48.5
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 3.8e-14 81.6 85 60.0
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 5.0e-14 81.3 101 49.5
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 5.0e-14 81.3 103 48.5
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 5.0e-14 81.3 85 60.0
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.1e-13 80.1 67 65.7
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 1.9e-13 79.3 77 59.7
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 4.2e-13 78.2 88 52.3
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 4.2e-13 78.2 102 47.1
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 7.2e-13 77.4 103 46.6
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 2.7e-12 75.5 75 60.0
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 4.7e-12 74.7 74 59.5
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 6.1e-12 74.3 88 50.0
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 6.1e-12 74.3 72 59.7
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 8.0e-12 73.9 96 49.0
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 4.0e-11 71.6 78 52.6
Prupe.7G153800 Prunus persica HOM05D006100 ORTHO05D007539 5.2e-11 71.2 130 40.0
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.2e-10 70.1 81 49.4
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 1.5e-10 69.7 82 54.9
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 1.5e-10 69.7 95 51.6
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 2.0e-10 69.3 71 56.3
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 2.6e-10 68.9 89 46.1
Sopen02g030020 Solanum pennellii HOM05D006100 ORTHO05D007539 7.5e-10 67.4 74 59.5
Solyc02g085330.1 Solanum lycopersicum HOM05D006100 ORTHO05D007539 9.8e-10 67.0 97 49.5
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 1.3e-09 66.6 88 42.0
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 1.7e-09 66.2 45 66.7
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.7e-09 66.2 127 39.4
AUR62007561 Chenopodium quinoa HOM05D006100 ORTHO05D007539 4.9e-09 64.7 88 45.5
Lj4g0020328 Lotus japonicus HOM05D006100 ORTHO05D007539 8.3e-09 63.9 93 45.2
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 8.3e-09 63.9 87 48.3
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 1.8e-08 62.8 52 61.5
DCAR_025920 Daucus carota HOM05D006100 ORTHO05D007539 2.4e-08 62.4 61 59.0
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 1.6e-07 59.7 89 49.4
CDE01G0731 Ceratophyllum demersum HOM05D006100 ORTHO05D007539 2.7e-07 58.9 81 48.1
SalBow5G1753 Salvia bowleyana HOM05D006100 ORTHO05D007539 2.3e-06 55.8 73 43.8
Sc03g0002950 Simmondsia chinensis HOM05D006100 ORTHO05D007539 6.6e-06 54.3 64 53.1


User provided reference genes

Program Settings