Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 4.7e-40 167.5 93 100.0
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.8e-31 139.0 93 88.2
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.0e-31 137.9 96 74.0
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 6.4e-29 130.6 95 72.6
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.7e-27 125.2 96 68.8
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-25 119.8 66 81.8
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 2.5e-25 118.6 93 67.7
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 2.5e-25 118.6 93 67.7
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 2.5e-25 118.6 93 67.7
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 2.5e-25 118.6 93 67.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-24 116.3 93 66.7
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 3.7e-21 104.8 96 62.5
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 1.9e-20 102.4 94 62.8
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 1.9e-20 102.4 94 62.8
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 1.9e-20 102.4 94 62.8
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 5.4e-20 100.9 94 61.7
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 9.9e-14 80.1 104 50.0
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 1.7e-13 79.3 67 62.7
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.4e-13 77.0 57 59.6
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-12 76.3 106 49.1
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.4e-12 76.3 106 49.1
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.4e-12 76.3 57 61.4
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 3.2e-12 75.1 59 64.4
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.2e-12 75.1 57 59.6
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.2e-12 75.1 57 59.6
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 4.2e-12 74.7 98 51.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.2e-12 74.7 60 63.3
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 4.2e-12 74.7 60 56.7
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 5.4e-12 74.3 76 59.2
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.1e-12 73.9 59 55.9
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.1e-12 73.9 59 55.9
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 7.1e-12 73.9 59 55.9
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.6e-11 72.8 60 60.0
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.1e-11 72.4 60 60.0
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 2.1e-11 72.4 60 58.3
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.7e-11 72.0 79 57.0
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.7e-10 69.3 58 55.2
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.7e-10 69.3 58 55.2
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.7e-10 69.3 58 55.2
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.3e-10 68.9 71 54.9
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 3.9e-10 68.2 60 56.7
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 5.1e-10 67.8 56 57.1
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.1e-10 67.8 59 52.5
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 6.6e-10 67.4 60 51.7
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 8.7e-10 67.0 59 50.8
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.1e-09 66.6 60 51.7
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.1e-09 66.6 59 57.6
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.5e-09 66.2 60 56.7
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.5e-09 66.2 60 51.7
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 1.9e-09 65.9 58 56.9
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 5.6e-09 64.3 67 49.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 5.6e-09 64.3 60 53.3
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-08 63.2 56 55.4
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 63.2 94 45.7
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 63.2 56 55.4
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-08 63.2 56 55.4
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-08 63.2 56 55.4
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.3e-08 63.2 56 55.4
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-08 62.8 56 55.4
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-08 62.8 56 55.4
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 1.6e-08 62.8 56 55.4
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.6e-08 62.8 48 66.7
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.6e-08 62.8 60 51.7
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.1e-08 62.4 56 53.6
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 2.1e-08 62.4 60 46.7
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 2.8e-08 62.0 64 57.8
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-08 62.0 64 57.8
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 2.8e-08 62.0 64 57.8
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.8e-08 62.0 60 48.3
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 3.6e-08 61.6 39 79.5
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 4.8e-08 61.2 56 55.4
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.8e-08 61.2 56 55.4
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.8e-08 61.2 56 55.4
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.8e-08 61.2 60 46.7
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 6.2e-08 60.8 32 84.4
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 6.2e-08 60.8 32 84.4
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 6.2e-08 60.8 32 84.4
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 6.2e-08 60.8 56 55.4
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 8.1e-08 60.5 55 50.9
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 8.1e-08 60.5 62 50.0
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.4e-07 59.7 63 54.0
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 1.8e-07 59.3 37 81.1
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-07 59.3 55 52.7
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-07 59.3 55 52.7
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 1.8e-07 59.3 64 54.7
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.8e-07 59.3 62 46.8
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-07 58.9 56 51.8
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.4e-07 58.9 56 51.8
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 2.4e-07 58.9 69 50.7
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.1e-07 58.5 55 50.9
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 3.1e-07 58.5 39 76.9
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 3.1e-07 58.5 39 76.9
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 3.1e-07 58.5 39 76.9
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 3.1e-07 58.5 66 47.0
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 3.1e-07 58.5 56 53.6
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 4.0e-07 58.2 56 51.8
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 4.0e-07 58.2 60 46.7
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 4.0e-07 58.2 55 50.9
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 4.0e-07 58.2 60 50.0
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 5.3e-07 57.8 28 82.1
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 5.3e-07 57.8 28 82.1
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 9.0e-07 57.0 56 51.8
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 9.0e-07 57.0 54 50.0
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 9.0e-07 57.0 62 51.6
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.2e-06 56.6 59 52.5
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 1.2e-06 56.6 59 45.8
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.2e-06 56.6 61 50.8
BcaB01g05659 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-06 56.2 39 74.4
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 1.5e-06 56.2 28 89.3
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.0e-06 55.8 64 50.0
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 2.0e-06 55.8 62 45.2
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 2.6e-06 55.5 60 45.0
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 4.4e-06 54.7 59 50.8
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 5.8e-06 54.3 56 50.0
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 5.8e-06 54.3 56 50.0
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 5.8e-06 54.3 30 80.0
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 7.6e-06 53.9 57 47.4


User provided reference genes

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