Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 0.0e+00 1298.9 677 100.0
Carub.0001s3399 Capsella rubella HOM05D008386 ORTHO05D010572 2.6e-127 460.3 684 42.3
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 2.3e-51 208.0 582 30.4
BcaC06g36507 Brassica carinata HOM05D006121 ORTHO05D009559 2.1e-49 201.4 620 28.7
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 1.0e-43 182.6 568 28.2
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-41 175.6 206 43.7
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 3.7e-41 174.1 221 41.6
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 9.0e-40 169.5 238 36.6
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-38 165.2 211 41.2
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 5.5e-37 160.2 180 42.2
BcaC05g27793 Brassica carinata HOM05D006121 ORTHO05D009559 2.7e-36 157.9 238 36.6
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 3.5e-36 157.5 318 34.6
BcaC04g20762 Brassica carinata HOM05D006121 ORTHO05D009559 6.1e-36 156.8 318 34.0
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-35 155.2 235 40.9
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 3.3e-34 151.0 235 36.6
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 9.7e-34 149.4 192 39.6
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-33 148.3 203 38.9
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-33 148.3 234 38.0
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 3.1e-32 144.4 325 31.4
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 9.0e-32 142.9 576 28.3
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-31 141.0 262 37.4
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-30 139.0 528 27.5
BraA09t38607Z Brassica rapa HOM05D006121 ORTHO05D009559 2.2e-30 138.3 479 27.1
BcaC02g11960 Brassica carinata HOM05D006121 ORTHO05D009559 2.9e-30 137.9 204 36.8
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 3.8e-30 137.5 543 27.8
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 3.2e-29 134.4 597 25.5
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 3.2e-29 134.4 604 25.8
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 4.2e-29 134.0 476 25.8
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 9.4e-29 132.9 552 24.5
BcaC02g10683 Brassica carinata HOM05D008386 ORTHO05D010572 2.7e-28 131.3 249 33.3
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 2.7e-28 131.3 234 36.3
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.0e-27 129.4 681 24.4
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.0e-27 127.9 676 24.6
BcaC08g42828 Brassica carinata HOM05D008386 ORTHO05D010572 2.5e-26 124.8 276 30.1
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.7e-26 123.6 677 24.2
BcaC01g02130 Brassica carinata HOM05D008386 ORTHO05D010572 7.4e-26 123.2 249 33.7
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.7e-25 122.1 655 25.3
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.8e-25 121.3 646 24.6
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.4e-24 119.0 654 24.8
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-24 118.6 203 36.0
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-24 118.6 673 23.9
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-24 118.6 678 24.2
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.4e-24 118.2 676 23.7
BcaC04g20778 Brassica carinata HOM05D008386 ORTHO05D010572 2.4e-24 118.2 249 32.5
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 3.1e-24 117.9 670 26.3
BcaC09g49551 Brassica carinata HOM05D008386 ORTHO05D010572 5.3e-24 117.1 253 33.2
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.9e-24 116.7 672 23.5
BcaC04g21234 Brassica carinata HOM05D008386 ORTHO05D010572 1.5e-23 115.5 280 32.9
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 3.4e-23 114.4 353 26.1
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.5e-23 114.0 680 24.1
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.0e-22 112.8 675 24.4
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.7e-22 112.1 228 27.6
BolC7t41498H Brassica oleracea HOM05D006121 ORTHO05D009559 3.8e-22 110.9 166 37.3
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 3.8e-22 110.9 131 37.4
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.0e-22 110.5 674 22.4
BcaC02g10386 Brassica carinata HOM05D008386 ORTHO05D010572 1.1e-21 109.4 237 32.9
BcaC05g28043 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-21 109.4 138 37.7
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.4e-21 109.0 668 23.8
BcaC05g28468 Brassica carinata HOM05D006121 ORTHO05D009559 1.4e-21 109.0 170 34.7
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.9e-21 108.6 647 23.5
BraA06t25079Z Brassica rapa HOM05D006121 ORTHO05D009559 1.9e-21 108.6 121 40.5
BcaC04g23066 Brassica carinata HOM05D006121 ORTHO05D009559 4.2e-21 107.5 179 39.1
BcaC05g26479 Brassica carinata HOM05D008386 ORTHO05D010572 5.5e-21 107.1 256 32.4
BcaC03g15124 Brassica carinata HOM05D008386 ORTHO05D010572 1.6e-20 105.5 220 35.0
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.6e-20 104.4 685 23.1
BcaC03g16486 Brassica carinata HOM05D006121 ORTHO05D009559 3.6e-20 104.4 110 42.7
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 1.0e-19 102.8 241 29.9
BcaB04g18086 Brassica carinata HOM05D008386 ORTHO05D010572 1.8e-19 102.1 191 37.2
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 1.8e-19 102.1 601 24.1
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.3e-19 101.7 205 31.2
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.0e-19 101.3 690 23.5
BcaB08g35499 Brassica carinata HOM05D008386 ORTHO05D010572 3.9e-19 100.9 249 31.7
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.1e-19 100.5 680 22.6
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 6.7e-19 100.1 633 23.1
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.8e-19 99.8 677 23.3
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.0e-18 98.6 407 25.3
BolC9t56759H Brassica oleracea HOM05D006121 ORTHO05D009559 2.6e-18 98.2 103 45.6
BcaC02g09767 Brassica carinata HOM05D006121 ORTHO05D009559 4.4e-18 97.4 276 27.9
BcaC08g42838 Brassica carinata HOM05D006121 ORTHO05D009559 7.4e-18 96.7 134 37.3
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 1.7e-17 95.5 195 29.7
BcaC04g20594 Brassica carinata HOM05D006121 ORTHO05D009559 4.8e-17 94.0 379 28.5
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 6.3e-17 93.6 464 23.9
BcaC01g01840 Brassica carinata HOM05D008386 ORTHO05D010572 8.2e-17 93.2 217 31.8
AL7G45790 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.4e-16 92.4 590 25.1
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 2.4e-16 91.7 160 29.4
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 5.3e-16 90.5 587 22.3
BcaC08g43580 Brassica carinata HOM05D006121 ORTHO05D009559 9.1e-16 89.7 229 27.1
BcaB08g35205 Brassica carinata HOM05D008386 ORTHO05D010572 1.2e-15 89.4 233 30.9
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.2e-15 89.4 181 30.4
BolC1t03978H Brassica oleracea HOM05D003421 ORTHO05D003268 2.6e-15 88.2 178 34.3
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 2.6e-15 88.2 468 23.5
BcaC06g36167 Brassica carinata HOM05D006121 ORTHO05D009559 3.5e-15 87.8 237 29.5
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 7.7e-15 86.7 597 24.1
BcaC03g15823 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-14 85.1 119 36.1
BraA01t02430Z Brassica rapa HOM05D008386 ORTHO05D010572 2.2e-14 85.1 116 40.5
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 2.9e-14 84.7 573 23.7
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 2.9e-14 84.7 594 22.1
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.5e-14 83.6 531 25.2
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 6.5e-14 83.6 439 24.6
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.5e-14 83.2 685 21.6
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 8.5e-14 83.2 286 25.2
BcaC01g00176 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-13 82.8 91 40.7
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.5e-13 82.4 624 24.4
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-13 82.4 132 31.8
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 1.5e-13 82.4 243 25.5
BcaC06g35988 Brassica carinata HOM05D006121 ORTHO05D009559 2.5e-13 81.6 267 25.8
BcaC09g50206 Brassica carinata HOM05D006121 ORTHO05D009559 2.5e-13 81.6 119 35.3
BolC8t48271H Brassica oleracea HOM05D003421 ORTHO05D003268 5.5e-13 80.5 176 31.8
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.2e-13 80.1 137 34.3
BcaC06g35841 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-12 79.3 99 41.4
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.6e-12 79.0 140 31.4
BcaC04g20964 Brassica carinata HOM05D003421 ORTHO05D003268 2.1e-12 78.6 275 28.0
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.7e-12 78.2 130 32.3
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.7e-12 77.4 568 22.4
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 1.4e-11 75.9 583 23.2
Sp6g07550 Schrenkiella parvula HOM05D010772 ORTHO05D005680 1.4e-11 75.9 144 28.5
BcaB04g17962 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-11 75.5 91 42.9
BcaC09g51377 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-11 75.5 105 40.0
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 1.8e-11 75.5 528 22.7
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.3e-11 75.1 126 31.0
BolC4t23765H Brassica oleracea HOM05D003421 ORTHO05D003268 3.9e-11 74.3 180 31.7
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 5.2e-11 73.9 504 22.6
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.7e-11 73.6 100 36.0
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 6.7e-11 73.6 485 24.3
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 8.8e-11 73.2 111 32.4
CARHR119450 Cardamine hirsuta HOM05D006121 ORTHO05D043487 8.8e-11 73.2 85 44.7
BcaC01g02164 Brassica carinata HOM05D008386 ORTHO05D010572 1.1e-10 72.8 194 30.9
A03p68840 Brassica napus HOM05D008596 ORTHO05D003268 1.1e-10 72.8 131 30.5
BraSC39t46179Z Brassica rapa HOM05D008596 ORTHO05D003268 1.1e-10 72.8 131 30.5
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.5e-10 72.4 374 24.1
BolC9t56748H Brassica oleracea HOM05D003421 ORTHO05D003268 1.5e-10 72.4 207 29.5
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 1.5e-10 72.4 531 23.5
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.5e-10 72.4 104 39.4
BolC3t19281H Brassica oleracea HOM05D003421 ORTHO05D003268 2.6e-10 71.6 265 23.0
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 2.6e-10 71.6 623 20.7
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 2.6e-10 71.6 507 22.5
BcaC07g37265 Brassica carinata HOM05D006121 ORTHO05D009559 3.3e-10 71.2 99 39.4
BcaC04g20823 Brassica carinata HOM05D006121 ORTHO05D009559 5.7e-10 70.5 79 39.2
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 7.4e-10 70.1 516 23.4
BolC5t33453H Brassica oleracea HOM05D003421 ORTHO05D003268 9.7e-10 69.7 236 24.2
C05p29190 Brassica napus HOM05D006121 ORTHO05D009559 1.3e-09 69.3 143 32.9
BolC1t03080H Brassica oleracea HOM05D008386 ORTHO05D010572 1.7e-09 68.9 116 34.5
BraA01t02722Z Brassica rapa HOM05D003421 ORTHO05D003268 2.2e-09 68.6 240 26.7
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 2.2e-09 68.6 633 21.3
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 2.8e-09 68.2 122 27.9
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.8e-09 68.2 74 50.0
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 3.7e-09 67.8 122 27.9
CARHR216340 Cardamine hirsuta HOM05D008386 ORTHO05D010572 3.7e-09 67.8 108 33.3
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 4.8e-09 67.4 331 26.0
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 8.2e-09 66.6 531 21.1
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.1e-08 66.2 98 34.7
Carub.0006s2663 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-08 66.2 99 34.3
BcaC03g15126 Brassica carinata HOM05D006121 ORTHO05D009559 1.4e-08 65.9 138 29.7
Thhalv10000667m.g Eutrema salsugineum HOM05D006121 ORTHO05D010628 1.4e-08 65.9 79 40.5
BolC9t58013H Brassica oleracea HOM05D006121 ORTHO05D009559 1.8e-08 65.5 44 54.5
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 1.8e-08 65.5 122 27.9
BcaC02g10718 Brassica carinata HOM05D006121 ORTHO05D009559 7.0e-08 63.5 87 39.1
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 9.1e-08 63.2 653 21.3
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 1.2e-07 62.8 534 22.3
BolC3t19358H Brassica oleracea HOM05D003421 ORTHO05D003268 1.6e-07 62.4 187 28.3
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 2.0e-07 62.0 85 35.3
BcaC04g20824 Brassica carinata HOM05D006121 ORTHO05D013509 3.5e-07 61.2 207 22.7
BcaC06g35840 Brassica carinata HOM05D006121 ORTHO05D013509 4.5e-07 60.8 215 23.3
BcaC07g38132 Brassica carinata HOM05D008386 ORTHO05D010572 4.5e-07 60.8 167 29.9
CARHR216320 Cardamine hirsuta HOM05D006121 ORTHO05D043487 7.7e-07 60.1 72 41.7
BolC1t03345H Brassica oleracea HOM05D003421 ORTHO05D003268 1.0e-06 59.7 82 40.2
BcaC01g02131 Brassica carinata HOM05D006121 ORTHO05D013509 1.3e-06 59.3 207 24.2
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 1.7e-06 58.9 464 22.8
Rhsim08G0029200 Rhododendron simsii HOM05D009413 ORTHO05D000116 1.7e-06 58.9 149 27.5
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.2e-06 58.5 63 47.6
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.9e-06 58.2 77 33.8
Carub.0014s0006 Capsella rubella HOM05D009492 ORTHO05D011693 3.8e-06 57.8 139 26.6
BolC9t56870H Brassica oleracea HOM05D003421 ORTHO05D003268 5.0e-06 57.4 226 26.1
BolC9t57206H Brassica oleracea HOM05D008386 ORTHO05D010572 5.0e-06 57.4 319 24.1
BcaC01g02121 Brassica carinata HOM05D008386 ORTHO05D010572 6.5e-06 57.0 87 42.5
SpUn0007_0110 Schrenkiella parvula HOM05D010772 ORTHO05D005680 6.5e-06 57.0 80 30.0
SpUn0013_0060 Schrenkiella parvula HOM05D010772 ORTHO05D005680 6.5e-06 57.0 80 30.0
SpUn0038_0040 Schrenkiella parvula HOM05D010772 ORTHO05D005680 6.5e-06 57.0 80 30.0


User provided reference genes

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