Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2456 Capsella rubella HOM05D002743 ORTHO05D002895 4.5e-191 671.0 317 100.0
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.7e-151 537.3 314 82.5
AT3G23950 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.6e-119 431.8 317 66.6
AL3G39570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.8e-116 422.5 315 67.0
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 7.5e-114 414.5 335 63.9
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.8e-114 414.1 318 64.5
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 3.7e-113 412.1 335 60.3
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 4.9e-113 411.8 335 60.0
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 8.3e-113 411.0 335 60.0
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 8.3e-113 411.0 335 60.9
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 1.9e-112 409.8 335 60.3
AT3G23970 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.5e-109 399.4 319 61.4
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.4e-106 389.0 312 63.5
Carub.0003s2455 Capsella rubella HOM05D002743 ORTHO05D002895 6.9e-99 364.8 320 59.1
CARHR033610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.8e-98 361.7 314 61.5
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 7.3e-93 344.7 308 58.1
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 2.7e-79 299.7 328 50.9
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.3e-77 292.7 299 55.9
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.6e-77 292.0 326 46.6
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.2e-72 275.8 326 45.4
Aa31LG9G5850 Aethionema arabicum HOM05D002743 ORTHO05D002895 1.1e-69 267.7 322 46.3
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.7e-68 262.7 290 48.6
Carub.0006s2838 Capsella rubella HOM05D002743 ORTHO05D002895 4.1e-67 259.2 330 41.8
CARHR288580 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.2e-65 253.4 210 62.9
Carub.0006s3248 Capsella rubella HOM05D002743 ORTHO05D002895 3.6e-63 246.1 325 41.8
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 5.3e-59 232.3 334 42.5
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.6e-58 229.9 273 45.1
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.1e-55 220.3 334 41.6
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.1e-55 218.8 284 43.0
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 2.5e-48 196.8 327 37.0
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.5e-34 149.4 317 32.2
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 8.5e-33 145.2 267 34.1
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 1.9e-32 144.1 319 29.8
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 5.5e-32 142.5 317 32.2
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 1.6e-31 141.0 333 29.1
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.7e-31 140.2 315 33.0
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 3.6e-31 139.8 333 28.8
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.8e-30 137.5 315 31.1
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-30 137.1 311 31.8
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-30 137.1 333 28.8
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 2.3e-30 137.1 311 31.8
CARHR288590 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.3e-30 137.1 108 63.9
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.0e-30 136.7 322 31.4
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 5.2e-30 136.0 336 28.6
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 1.5e-29 134.4 311 31.2
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 1.5e-29 134.4 311 31.2
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.6e-29 133.7 317 32.5
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 4.4e-29 132.9 311 31.2
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 7.5e-29 132.1 311 31.5
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 9.8e-29 131.7 320 30.0
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.2e-28 130.6 318 29.6
CARHR286560 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.8e-28 130.2 271 33.6
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 4.8e-28 129.4 327 31.2
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 6.3e-28 129.0 325 28.6
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-27 127.9 322 29.5
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.4e-27 127.9 324 29.3
A02p05860 Brassica napus HOM05D002743 ORTHO05D002895 2.4e-27 127.1 325 29.2
BraA02t05538Z Brassica rapa HOM05D002743 ORTHO05D002895 2.4e-27 127.1 325 29.2
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.1e-27 126.3 289 28.7
CARHR288600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 9.1e-27 125.2 94 66.0
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.6e-26 124.4 268 32.1
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 2.7e-26 123.6 332 29.2
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 3.5e-26 123.2 333 29.1
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 3.5e-26 123.2 304 27.6
BcaC06g36618 Brassica carinata HOM05D002743 ORTHO05D002895 4.5e-26 122.9 322 31.4
BcaC06g36619 Brassica carinata HOM05D002743 ORTHO05D002895 4.5e-26 122.9 322 31.4
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 5.9e-26 122.5 323 33.4
Carub.0006s3136 Capsella rubella HOM05D002743 ORTHO05D002895 1.0e-25 121.7 269 31.2
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 1.0e-25 121.7 308 31.5
BraA10t43899Z Brassica rapa HOM05D002743 ORTHO05D002895 1.3e-25 121.3 338 27.8
Carub.0007s1819 Capsella rubella HOM05D002743 ORTHO05D002895 1.3e-25 121.3 305 30.2
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-25 120.9 329 27.1
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 2.3e-25 120.6 303 26.7
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 3.8e-25 119.8 302 32.1
AL8G22310 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-24 118.2 250 30.8
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 1.5e-24 117.9 303 26.7
AL6G43570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.5e-24 117.1 276 29.3
Sp1g36850 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.5e-24 117.1 338 26.3
SpUn0137_0030 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.5e-24 117.1 338 26.3
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 3.2e-24 116.7 303 26.7
BraA04t16772Z Brassica rapa HOM05D002743 ORTHO05D002895 3.2e-24 116.7 306 30.4
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 3.2e-24 116.7 298 29.2
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 5.5e-24 115.9 280 30.0
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 5.5e-24 115.9 303 27.7
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.2e-24 115.5 297 27.6
CARHR286570 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.8e-23 113.6 331 29.6
AL3G39670 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.7e-23 112.8 312 26.3
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 6.1e-23 112.5 307 28.0
AL34U10080 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.0e-23 112.1 250 30.0
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.0e-22 111.7 310 30.3
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.0e-22 111.7 314 26.8
AL8G22320 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.4e-22 111.3 250 30.0
CARHR229890 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.4e-22 111.3 308 28.9
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 1.8e-22 110.9 319 27.0
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 2.3e-22 110.5 307 30.0
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 4.0e-22 109.8 321 27.1
CARHR100310 Cardamine hirsuta HOM05D002743 ORTHO05D002895 4.0e-22 109.8 101 57.4
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 5.2e-22 109.4 310 28.4
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 5.2e-22 109.4 310 25.8
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 8.8e-22 108.6 320 27.2
CARHR131260 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.8e-22 108.6 287 31.0
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-21 108.2 325 28.6
AL6G43580 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.5e-21 107.8 303 27.7
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 2.0e-21 107.5 316 26.9
CARHR288610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 7.5e-21 105.5 150 44.0
Sp5g25320 Schrenkiella parvula HOM05D002743 ORTHO05D002895 9.8e-21 105.1 282 29.8
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-20 104.8 294 29.6
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 2.2e-20 104.0 303 25.7
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 3.7e-20 103.2 262 27.5
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 3.7e-20 103.2 262 27.5
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 4.9e-20 102.8 319 28.2
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 4.9e-20 102.8 319 28.2
AL5G18360 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.3e-20 102.4 321 29.3
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 8.3e-20 102.1 319 28.2
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 1.1e-19 101.7 311 27.7
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 1.4e-19 101.3 311 27.7
C09p04580 Brassica napus HOM05D002743 ORTHO05D002895 4.1e-19 99.8 295 26.8
Carub.0005s0676 Capsella rubella HOM05D002743 ORTHO05D002895 4.1e-19 99.8 249 30.1
CARHR040090 Cardamine hirsuta HOM05D002743 ORTHO05D002895 5.4e-19 99.4 319 27.9
C07p02110 Brassica napus HOM05D002743 ORTHO05D002895 7.0e-19 99.0 322 28.6
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 7.0e-19 99.0 262 28.2
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.2e-18 98.2 299 26.4
Carub.0004s1288 Capsella rubella HOM05D002743 ORTHO05D002895 4.5e-18 96.3 281 28.8
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-17 94.7 247 29.1
Carub.0005s0673 Capsella rubella HOM05D002743 ORTHO05D002895 1.7e-17 94.4 276 29.3
Thhalv10023522m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.7e-17 94.4 269 28.6
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 2.3e-17 94.0 259 28.6
CARHR033590 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.9e-17 93.6 76 60.5
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 3.3e-16 90.1 306 26.8
Carub.0006s2840 Capsella rubella HOM05D002743 ORTHO05D002895 5.6e-16 89.4 263 28.9
BolC2t06987H Brassica oleracea HOM05D002743 ORTHO05D002895 3.6e-15 86.7 204 27.9
BraA08t33514Z Brassica rapa HOM05D002743 ORTHO05D002895 8.0e-15 85.5 195 28.7
BcaC02g09624 Brassica carinata HOM05D002743 ORTHO05D002895 1.8e-14 84.3 190 32.1
BolC4t26061H Brassica oleracea HOM05D002743 ORTHO05D002895 1.8e-14 84.3 190 32.1
Thhalv10009727m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.8e-14 84.3 308 27.3
SGA_v2.0_scaffold1G00346 Striga asiatica HOM05D001729 ORTHO05D001155 3.0e-14 83.6 247 30.0
Thhalv10023870m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.4e-13 80.1 76 51.3
AL4G45790 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.5e-13 79.0 139 33.8
CARHR147000 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.3e-12 78.2 142 32.4
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.2e-12 77.4 190 31.1
Thhalv10028185m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 1.4e-11 74.7 226 27.4
SGA_v2.0_scaffold1G00761 Striga asiatica HOM05D001729 ORTHO05D001155 1.4e-11 74.7 263 27.8
AUR62035624 Chenopodium quinoa HOM05D001729 ORTHO05D001155 1.8e-11 74.3 270 25.2
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 2.4e-11 73.9 170 30.0
BNapus_Darmor_BZH_scaffold_38p02050 Brassica napus HOM05D002743 ORTHO05D002895 3.2e-11 73.6 181 31.5
AUR62006002 Chenopodium quinoa HOM05D001729 ORTHO05D001155 4.1e-11 73.2 250 26.4
CARHR033580 Cardamine hirsuta HOM05D002743 ORTHO05D002895 7.0e-11 72.4 86 46.5
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 1.6e-10 71.2 247 26.3
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 4.6e-10 69.7 200 27.0
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 7.8e-10 68.9 158 31.6
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.0e-09 68.6 176 29.5
CARHR149600 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.3e-09 68.2 161 31.7
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 1.7e-09 67.8 180 30.0
AL34U10060 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.3e-09 67.4 137 30.7
Migut.L01260 Erythranthe guttata HOM05D001729 ORTHO05D001155 6.6e-09 65.9 255 23.9
BolC4t26059H Brassica oleracea HOM05D002743 ORTHO05D002895 8.6e-09 65.5 177 31.1
HanXRQChr04g0121411 Helianthus annuus HOM05D001729 ORTHO05D001155 8.6e-09 65.5 282 24.5
AT3G48220 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.9e-08 64.3 138 31.2
BolC6t35601H Brassica oleracea HOM05D002743 ORTHO05D002895 1.9e-08 64.3 137 29.2
BcaNung01438 Brassica carinata HOM05D002743 ORTHO05D002895 2.5e-08 63.9 152 32.2
Lsat_1_v5_gn_5_31100 Lactuca sativa HOM05D001729 ORTHO05D001155 2.5e-08 63.9 274 24.1
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.3e-08 63.5 271 23.6
BcaC08g43172 Brassica carinata HOM05D002743 ORTHO05D002895 9.5e-08 62.0 131 29.0
A02p35840 Brassica napus HOM05D002743 ORTHO05D002895 9.5e-08 62.0 102 37.3
CARHR286590 Cardamine hirsuta HOM05D002743 ORTHO05D002895 9.5e-08 62.0 143 30.1
BcaB02g11118 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-07 61.6 137 27.7
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 4.7e-07 59.7 202 25.2
AL133U10030 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.0e-07 58.9 119 29.4
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.0e-07 58.9 125 29.6
BNapus_Darmor_BZH_scaffold_38p02040 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-06 58.5 175 29.7
BolC7t40616H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-06 58.2 140 30.7
Lj2C966T3 Lonicera japonica HOM05D001729 ORTHO05D001155 1.4e-06 58.2 245 23.7
BolC7t45770H Brassica oleracea HOM05D002743 ORTHO05D002895 1.8e-06 57.8 125 33.6
AUR62006003 Chenopodium quinoa HOM05D001729 ORTHO05D001155 2.3e-06 57.4 306 22.9
AUR62035623 Chenopodium quinoa HOM05D001729 ORTHO05D001155 2.3e-06 57.4 299 23.7
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 4.0e-06 56.6 133 31.6


User provided reference genes

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