Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 1.3e-88 329.7 169 100.0
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.9e-84 315.8 169 95.9
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 4.3e-84 314.7 169 95.3
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 5.9e-81 304.3 169 91.7
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 7.7e-81 303.9 169 91.1
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 2.2e-80 302.4 169 90.5
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 2.9e-80 302.0 169 91.1
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 3.8e-80 301.6 169 90.5
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 3.8e-80 301.6 169 90.5
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 5.0e-80 301.2 169 91.1
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 5.0e-80 301.2 169 91.1
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 2.7e-78 295.4 162 91.4
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 2.2e-67 259.2 151 85.4
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 2.2e-67 259.2 169 76.9
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 6.5e-64 247.7 161 77.0
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 5.5e-63 244.6 159 76.1
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 7.2e-63 244.2 159 75.5
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 9.4e-63 243.8 161 76.4
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 9.4e-63 243.8 158 75.3
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.2e-62 243.4 159 76.1
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.2e-62 243.4 155 76.1
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.2e-62 243.4 155 76.1
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 1.6e-62 243.0 158 74.7
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 1.6e-62 243.0 160 74.4
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 2.1e-62 242.7 159 76.1
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 2.1e-62 242.7 162 72.8
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 4.7e-62 241.5 163 72.4
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 4.7e-62 241.5 163 74.2
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 4.7e-62 241.5 159 74.2
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 8.0e-62 240.7 160 75.0
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 8.0e-62 240.7 160 75.0
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 8.0e-62 240.7 160 74.4
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.0e-61 240.4 163 71.8
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 1.0e-61 240.4 163 71.8
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.0e-61 240.4 157 75.8
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 2.3e-61 239.2 155 73.5
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 3.0e-61 238.8 154 76.0
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 3.0e-61 238.8 160 75.6
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 3.9e-61 238.4 154 76.6
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 5.2e-61 238.0 157 73.2
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 5.2e-61 238.0 160 71.9
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 5.2e-61 238.0 158 74.7
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 5.2e-61 238.0 158 74.1
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 5.2e-61 238.0 161 73.9
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 5.2e-61 238.0 162 71.6
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 6.7e-61 237.7 160 72.5
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 8.8e-61 237.3 163 72.4
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 1.1e-60 236.9 154 75.3
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 1.5e-60 236.5 157 73.9
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 1.5e-60 236.5 158 74.1
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 1.5e-60 236.5 158 74.1
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.5e-60 236.5 158 74.1
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 2.0e-60 236.1 166 70.5
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.0e-60 236.1 158 73.4
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 3.3e-60 235.3 159 73.6
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 3.3e-60 235.3 162 70.4
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 3.3e-60 235.3 159 73.6
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 4.4e-60 235.0 164 71.3
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.4e-60 235.0 160 72.5
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 5.7e-60 234.6 163 71.8
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 9.7e-60 233.8 154 72.1
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 9.7e-60 233.8 155 74.8
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 2.2e-59 232.6 159 71.7
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 3.7e-59 231.9 155 71.6
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 6.3e-59 231.1 159 71.7
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 8.2e-59 230.7 158 72.2
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 8.2e-59 230.7 154 73.4
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 8.2e-59 230.7 158 72.8
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 8.2e-59 230.7 146 78.1
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 1.1e-58 230.3 154 75.3
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 1.4e-58 229.9 157 72.0
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.8e-58 229.6 160 71.9
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.8e-58 229.6 160 71.2
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 4.1e-58 228.4 157 72.6
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 1.2e-57 226.9 151 74.2
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 1.6e-57 226.5 159 69.8
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 1.6e-57 226.5 154 71.4
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 2.0e-57 226.1 157 70.7
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 2.0e-57 226.1 152 73.7
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 2.0e-57 226.1 154 70.8
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.6e-57 225.7 158 72.8
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 3.5e-57 225.3 146 75.3
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 4.5e-57 224.9 146 74.0
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 5.9e-57 224.6 152 73.0
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 7.7e-57 224.2 157 69.4
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 1.3e-56 223.4 151 72.8
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 2.9e-56 222.2 150 71.3
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 1.1e-55 220.3 156 67.9
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 3.2e-55 218.8 144 74.3
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 3.6e-54 215.3 141 73.8
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 3.0e-53 212.2 115 93.9
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 3.0e-53 212.2 178 62.4
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 3.0e-53 212.2 166 66.3
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 4.0e-53 211.8 160 68.1
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 5.2e-53 211.5 192 59.9
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 1.7e-51 206.5 176 63.6
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 2.5e-47 192.6 162 56.8
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.5e-44 183.3 168 56.5
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 9.8e-44 180.6 169 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 5.0e-40 168.3 159 52.8
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 8.6e-40 167.5 95 82.1
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 1.1e-39 167.2 116 73.3
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 3.3e-39 165.6 94 80.9
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 5.5e-39 164.9 120 68.3
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 4.7e-38 161.8 151 57.0
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 4.0e-37 158.7 163 54.6
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 1.2e-36 157.1 157 49.7
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 2.0e-33 146.4 155 49.0
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 2.3e-32 142.9 261 39.5
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 3.9e-32 142.1 155 43.2
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 1.6e-25 120.2 141 41.8
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 2.7e-25 119.4 88 70.5
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 9.8e-20 100.9 77 66.2
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 8.3e-19 97.8 64 75.0
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 7.0e-18 94.7 64 71.9
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.0e-16 90.9 55 78.2
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 3.0e-16 89.4 45 88.9
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 3.9e-16 89.0 93 53.8
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 8.1e-14 81.3 63 58.7
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 8.9e-13 77.8 37 94.6
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 5.8e-12 75.1 37 89.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 4.6e-09 65.5 150 30.7
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.1e-07 60.8 50 62.0


User provided reference genes

Program Settings