Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 3.2e-92 342.0 210 100.0
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 1.9e-73 279.6 215 88.8
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 3.6e-72 275.4 211 73.0
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 4.7e-72 275.0 212 73.1
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 4.7e-72 275.0 212 73.1
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 4.7e-72 275.0 212 73.1
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 4.9e-69 265.0 214 83.6
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 3.2e-68 262.3 212 80.7
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 1.2e-67 260.4 210 78.1
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 3.5e-67 258.8 210 77.6
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 4.6e-67 258.5 213 83.6
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 3.9e-66 255.4 210 75.7
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 6.6e-66 254.6 217 80.6
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 8.1e-64 247.7 211 77.3
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 5.1e-58 228.4 181 86.2
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 2.4e-55 219.5 187 82.4
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 8.7e-34 147.9 211 47.9
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 1.5e-33 147.1 214 50.9
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 1.3e-32 144.1 215 48.8
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 4.8e-32 142.1 212 54.7
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 8.2e-32 141.4 214 47.7
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 2.4e-31 139.8 215 48.4
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 5.3e-31 138.7 213 58.7
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 1.5e-30 137.1 202 63.9
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 2.0e-30 136.7 213 48.4
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 5.8e-30 135.2 216 48.6
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 7.6e-30 134.8 214 49.1
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 1.0e-29 134.4 210 60.5
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.0e-29 134.4 210 60.5
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 2.2e-29 133.3 210 59.0
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 1.4e-28 130.6 217 54.4
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 1.4e-28 130.6 202 47.5
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 1.4e-28 130.6 213 58.7
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.9e-28 130.2 210 52.4
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 2.5e-28 129.8 216 57.9
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 2.5e-28 129.8 213 54.5
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 2.5e-28 129.8 222 49.1
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 3.2e-28 129.4 220 45.9
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 3.2e-28 129.4 211 55.0
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 3.2e-28 129.4 213 49.8
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 4.2e-28 129.0 216 58.3
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 4.2e-28 129.0 213 54.9
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 9.3e-28 127.9 213 56.3
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 1.6e-27 127.1 213 55.9
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 6.1e-27 125.2 222 52.7
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 6.1e-27 125.2 213 54.0
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 7.9e-27 124.8 213 54.5
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 7.9e-27 124.8 215 57.7
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 1.0e-26 124.4 223 51.6
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 1.3e-26 124.0 216 60.2
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 1.3e-26 124.0 218 56.9
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 1.3e-26 124.0 210 46.2
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 1.3e-26 124.0 212 50.0
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 1.8e-26 123.6 210 59.0
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 3.0e-26 122.9 202 59.4
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 3.9e-26 122.5 202 59.4
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 3.9e-26 122.5 212 56.6
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 3.9e-26 122.5 214 55.1
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 6.7e-26 121.7 100 71.0
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 6.7e-26 121.7 210 59.0
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 6.7e-26 121.7 202 56.9
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 8.7e-26 121.3 209 55.5
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 1.1e-25 120.9 220 57.7
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 1.1e-25 120.9 214 54.7
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 1.5e-25 120.6 186 45.7
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.5e-25 120.6 207 58.9
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 1.5e-25 120.6 203 61.6
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 2.5e-25 119.8 214 54.2
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 3.3e-25 119.4 210 58.1
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 4.3e-25 119.0 215 53.0
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 5.7e-25 118.6 214 58.4
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 7.4e-25 118.2 202 53.0
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 1.6e-24 117.1 214 53.7
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 2.2e-24 116.7 214 54.2
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 3.7e-24 115.9 213 56.3
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 8.2e-24 114.8 203 48.8
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 3.1e-23 112.8 214 40.2
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 9.0e-23 111.3 211 42.7
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 1.2e-22 110.9 212 45.8
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 1.5e-22 110.5 213 52.1
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 1.0e-21 107.8 214 38.8
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 2.9e-21 106.3 204 42.6
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 1.1e-20 104.4 202 43.6
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 1.4e-20 104.0 205 51.7
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 2.5e-20 103.2 202 42.6
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 2.5e-20 103.2 202 42.6
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 1.8e-18 97.1 206 44.2
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 4.3e-17 92.4 188 55.3
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 7.4e-17 91.7 211 53.1
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 1.3e-16 90.9 97 56.7
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 3.1e-15 86.3 96 53.1
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 5.3e-15 85.5 94 55.3
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 2.6e-14 83.2 91 57.1
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 4.5e-14 82.4 94 57.4
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 1.0e-13 81.3 97 51.5
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 2.9e-13 79.7 95 54.7
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 2.9e-13 79.7 98 52.0
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 2.9e-13 79.7 192 50.0
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.1e-12 77.8 218 48.6
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.4e-12 77.4 98 51.0
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 2.5e-12 76.6 98 51.0
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 4.2e-12 75.9 205 36.6
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 9.4e-12 74.7 192 42.2
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 1.2e-11 74.3 99 52.5
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 1.6e-11 73.9 88 53.4
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 3.6e-11 72.8 173 33.5
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 5.1e-10 68.9 179 41.9
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.5e-09 67.4 199 33.2
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 3.3e-09 66.2 179 33.0
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 7.4e-09 65.1 169 33.1
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 7.4e-09 65.1 198 31.8
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 6.3e-08 62.0 176 30.1
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.8e-07 60.5 167 31.1
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 2.4e-07 60.1 205 32.7
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 2.4e-07 60.1 174 31.0
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 4.1e-07 59.3 50 64.0
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 5.3e-07 58.9 177 32.8
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 5.3e-07 58.9 208 31.7
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 7.0e-07 58.5 183 31.7
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 7.0e-07 58.5 182 32.4
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 9.1e-07 58.2 170 35.3
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 9.1e-07 58.2 202 32.2
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.2e-06 57.8 56 58.9
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.2e-06 57.8 170 34.1
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 1.5e-06 57.4 180 31.7
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.5e-06 57.4 187 32.1
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.5e-06 57.4 36 77.8
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-06 57.4 172 31.4
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 1.5e-06 57.4 170 30.6
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 1.5e-06 57.4 72 55.6
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 1.5e-06 57.4 35 82.9
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 2.0e-06 57.0 170 31.2
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.0e-06 57.0 168 32.7
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 2.6e-06 56.6 35 82.9
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.6e-06 56.6 170 34.1
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 2.6e-06 56.6 169 32.0
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 2.6e-06 56.6 180 30.6
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 3.5e-06 56.2 36 75.0
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 3.5e-06 56.2 35 80.0
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 4.5e-06 55.8 205 30.2
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 4.5e-06 55.8 179 30.7
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 5.9e-06 55.5 162 29.6
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 7.7e-06 55.1 35 80.0
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 7.7e-06 55.1 171 31.6
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.7e-06 55.1 35 80.0
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.7e-06 55.1 35 80.0
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.7e-06 55.1 35 80.0
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.7e-06 55.1 35 80.0
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.7e-06 55.1 35 80.0
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 7.7e-06 55.1 184 40.2
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 7.7e-06 55.1 171 32.7
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 7.7e-06 55.1 173 30.6
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 7.7e-06 55.1 35 80.0
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 7.7e-06 55.1 36 75.0


User provided reference genes

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