Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 1.4e-34 149.1 76 100.0
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.4e-29 132.5 76 82.9
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.8e-29 132.1 76 81.6
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 4.4e-28 127.5 76 76.3
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 5.8e-28 127.1 76 76.3
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 6.4e-27 123.6 76 77.6
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 8.3e-27 123.2 76 76.3
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 4.1e-26 120.9 76 76.3
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 9.2e-26 119.8 76 73.7
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 9.2e-26 119.8 76 73.7
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.2e-25 119.4 76 75.0
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.3e-24 115.2 76 73.7
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 5.6e-23 110.5 58 82.8
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 5.6e-23 110.5 58 82.8
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 9.5e-23 109.8 77 66.2
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 2.1e-22 108.6 58 81.0
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.1e-22 108.6 80 65.0
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 2.8e-22 108.2 58 81.0
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 4.7e-22 107.5 71 69.0
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 4.7e-22 107.5 59 79.7
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 8.1e-22 106.7 56 83.9
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 8.1e-22 106.7 56 83.9
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 8.1e-22 106.7 56 83.9
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 8.1e-22 106.7 71 66.2
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 8.1e-22 106.7 52 86.5
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 1.4e-21 105.9 54 83.3
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.8e-21 105.5 76 63.2
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.8e-21 105.5 54 83.3
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.3e-21 105.1 59 76.3
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.3e-21 105.1 59 76.3
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 2.3e-21 105.1 55 80.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 2.3e-21 105.1 54 85.2
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 2.3e-21 105.1 67 70.1
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 3.1e-21 104.8 53 84.9
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.1e-21 104.8 53 84.9
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 3.1e-21 104.8 58 79.3
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 4.0e-21 104.4 67 71.6
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 5.2e-21 104.0 56 78.6
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 5.2e-21 104.0 53 83.0
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.2e-21 104.0 53 84.9
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 5.2e-21 104.0 53 84.9
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.2e-21 104.0 53 84.9
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 5.2e-21 104.0 70 67.1
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 5.2e-21 104.0 58 77.6
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 6.8e-21 103.6 56 82.1
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 6.8e-21 103.6 56 82.1
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 6.8e-21 103.6 59 76.3
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 8.9e-21 103.2 50 90.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 8.9e-21 103.2 79 65.8
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 8.9e-21 103.2 65 69.2
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 8.9e-21 103.2 71 64.8
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 8.9e-21 103.2 53 81.1
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 8.9e-21 103.2 58 75.9
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 8.9e-21 103.2 76 63.2
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.2e-20 102.8 56 80.4
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.2e-20 102.8 64 68.8
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.2e-20 102.8 54 79.6
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 1.2e-20 102.8 67 71.6
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.2e-20 102.8 59 76.3
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 1.5e-20 102.4 55 81.8
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.0e-20 102.1 56 78.6
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.0e-20 102.1 54 79.6
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 2.0e-20 102.1 58 75.9
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.0e-20 102.1 54 81.5
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 2.0e-20 102.1 54 81.5
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 2.6e-20 101.7 53 81.1
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 2.6e-20 101.7 57 77.2
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 2.6e-20 101.7 58 74.1
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.6e-20 101.7 53 83.0
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 2.6e-20 101.7 54 77.8
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.4e-20 101.3 70 65.7
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.4e-20 101.3 50 86.0
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 3.4e-20 101.3 56 80.4
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.4e-20 101.3 58 74.1
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.4e-20 101.3 58 74.1
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 3.4e-20 101.3 58 74.1
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 3.4e-20 101.3 48 85.4
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 3.4e-20 101.3 50 84.0
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.4e-20 101.3 51 84.3
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.4e-20 101.3 51 84.3
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 3.4e-20 101.3 55 78.2
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 4.4e-20 100.9 50 82.0
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 4.4e-20 100.9 57 80.7
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 5.8e-20 100.5 58 75.9
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 5.8e-20 100.5 50 86.0
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 5.8e-20 100.5 64 70.3
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 7.5e-20 100.1 67 65.7
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 7.5e-20 100.1 58 75.9
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 7.5e-20 100.1 53 79.2
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 7.5e-20 100.1 58 75.9
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 7.5e-20 100.1 59 74.6
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 7.5e-20 100.1 49 85.7
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 7.5e-20 100.1 50 84.0
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 9.9e-20 99.8 54 77.8
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 9.9e-20 99.8 76 61.8
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 9.9e-20 99.8 58 74.1
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 9.9e-20 99.8 50 84.0
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 9.9e-20 99.8 50 84.0
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 9.9e-20 99.8 76 60.5
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 9.9e-20 99.8 58 75.9
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 9.9e-20 99.8 53 79.2
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.3e-19 99.4 59 72.9
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.3e-19 99.4 59 72.9
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.3e-19 99.4 50 82.0
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.7e-19 99.0 66 63.6
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 2.2e-19 98.6 58 72.4
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 2.2e-19 98.6 58 72.4
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.2e-19 98.6 51 82.4
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 2.9e-19 98.2 71 64.8
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.9e-19 98.2 48 83.3
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 2.9e-19 98.2 53 79.2
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.9e-19 98.2 58 77.6
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 2.9e-19 98.2 58 77.6
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 3.7e-19 97.8 50 82.0
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 4.9e-19 97.4 55 72.7
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 4.9e-19 97.4 53 77.4
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 4.9e-19 97.4 50 82.0
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 4.9e-19 97.4 53 77.4
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 6.4e-19 97.1 58 72.4
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 6.4e-19 97.1 57 73.7
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 8.3e-19 96.7 90 52.2
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 8.3e-19 96.7 90 52.2
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.1e-18 96.3 50 82.0
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 1.4e-18 95.9 54 75.9
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.9e-18 95.5 57 66.7
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.9e-18 95.5 57 66.7
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.9e-18 95.5 76 57.9
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.9e-18 95.5 49 79.6
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.2e-18 94.7 55 74.5
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 4.1e-18 94.4 46 84.8
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 5.4e-18 94.0 58 67.2
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 7.1e-18 93.6 59 71.2
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 7.1e-18 93.6 58 72.4
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 9.2e-18 93.2 51 74.5
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.1e-17 92.0 50 80.0
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.1e-17 92.0 51 80.4
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 2.1e-17 92.0 46 82.6
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 2.1e-17 92.0 46 82.6
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 3.5e-17 91.3 43 88.4
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 3.9e-16 87.8 54 72.2
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 3.9e-16 87.8 47 74.5
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 6.6e-16 87.0 57 64.9
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 8.6e-16 86.7 47 72.3
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.5e-15 85.9 49 75.5
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.5e-15 85.1 46 76.1
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.5e-15 85.1 46 76.1
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 7.3e-15 83.6 44 79.5
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 4.7e-14 80.9 42 76.2
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 8.1e-14 80.1 53 69.8
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 4.0e-13 77.8 72 54.2
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.4e-10 69.3 57 61.4
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 4.1e-10 67.8 32 90.6
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 4.1e-10 67.8 51 62.7
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 6.2e-06 53.9 25 88.0


User provided reference genes

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