Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 1.3e-20 102.1 48 100.0
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 8.4e-17 89.4 47 85.1
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 3.2e-16 87.4 47 87.2
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 6.0e-15 83.2 45 84.4
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 7.9e-15 82.8 41 90.2
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 1.0e-14 82.4 40 90.0
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 1.3e-14 82.0 38 94.7
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 1.8e-14 81.6 37 97.3
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.8e-14 81.6 36 100.0
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 1.8e-14 81.6 42 85.7
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 1.8e-14 81.6 41 87.8
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.3e-14 81.3 40 90.0
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 3.0e-14 80.9 41 87.8
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 3.0e-14 80.9 37 97.3
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 3.0e-14 80.9 40 90.0
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 3.0e-14 80.9 40 90.0
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.0e-14 80.9 36 97.2
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.0e-14 80.9 36 97.2
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 3.0e-14 80.9 38 94.7
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 3.0e-14 80.9 36 97.2
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.0e-14 80.9 37 94.6
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 3.0e-14 80.9 36 97.2
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 3.0e-14 80.9 37 94.6
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 3.0e-14 80.9 36 97.2
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 3.0e-14 80.9 44 81.8
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.9e-14 80.5 38 94.7
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 5.1e-14 80.1 35 100.0
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 5.1e-14 80.1 35 100.0
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 5.1e-14 80.1 35 100.0
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 5.1e-14 80.1 35 100.0
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 5.1e-14 80.1 35 100.0
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 5.1e-14 80.1 35 100.0
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 5.1e-14 80.1 35 100.0
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 8.7e-14 79.3 37 91.9
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 8.7e-14 79.3 36 94.4
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.5e-13 78.6 37 91.9
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.9e-13 78.2 35 97.1
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 3.3e-13 77.4 41 85.4
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 4.3e-13 77.0 43 81.4
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 4.3e-13 77.0 35 97.1
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 5.6e-13 76.6 37 97.3
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 1.3e-12 75.5 36 94.4
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 1.6e-12 75.1 36 91.7
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 1.6e-12 75.1 42 83.3
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 2.8e-12 74.3 32 100.0
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 3.7e-12 73.9 37 89.2
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 3.7e-12 73.9 35 94.3
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.7e-12 73.9 35 94.3
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.7e-12 73.9 35 94.3
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.7e-12 73.9 35 94.3
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.7e-12 73.9 35 94.3
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 3.7e-12 73.9 47 74.5
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 4.8e-12 73.6 37 86.5
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 6.2e-12 73.2 36 88.9
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-12 72.8 39 87.2
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.4e-11 72.0 37 89.2
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.4e-11 72.0 35 91.4
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.4e-11 72.0 35 91.4
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.4e-11 72.0 35 91.4
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.4e-11 72.0 35 91.4
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.4e-11 72.0 35 91.4
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.4e-11 72.0 35 91.4
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 1.8e-11 71.6 31 100.0
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 1.8e-11 71.6 36 88.9
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 1.8e-11 71.6 31 100.0
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.8e-11 71.6 32 100.0
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 2.4e-11 71.2 33 93.9
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 3.1e-11 70.9 32 96.9
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.0e-11 70.5 35 88.6
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.0e-11 70.5 35 88.6
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 1.2e-10 68.9 31 100.0
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 1.2e-10 68.9 31 100.0
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 1.2e-10 68.9 33 93.9
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 1.5e-10 68.6 35 88.6
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 1.5e-10 68.6 33 90.9
Pp3c21_2000 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.0e-10 68.2 35 85.7
Pp3c21_2022 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.0e-10 68.2 35 85.7
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 2.6e-10 67.8 30 100.0
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.6e-10 67.8 30 100.0
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.6e-10 67.8 30 100.0
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 2.6e-10 67.8 40 77.5
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.6e-10 67.8 31 96.8
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.6e-10 67.8 31 96.8
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.6e-10 67.8 31 96.8
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 2.6e-10 67.8 30 100.0
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 5.8e-10 66.6 33 90.9
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 5.8e-10 66.6 39 82.1
Medtr2g101670 Medicago truncatula HOM05D007699 ORTHO05D009796 3.8e-09 63.9 36 77.8
AT2G15530 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 8.4e-09 62.8 42 71.4
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 8.4e-09 62.8 35 80.0
Pp3c24_16090 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.9e-08 61.6 36 75.0
Pp3c24_16091 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.9e-08 61.6 36 75.0
Medtr6g070990 Medicago truncatula HOM05D007699 ORTHO05D009796 2.5e-08 61.2 29 93.1
SHI28974 Sapria himalayana HOM05D007699 ORTHO05D009796 4.6e-07 57.0 36 72.2
Pp3c27_1930 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.3e-06 55.5 32 75.0


User provided reference genes

Program Settings