Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 1.9e-38 162.2 91 100.0
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 1.6e-24 115.9 73 90.4
CARHR068680 Cardamine hirsuta HOM05D007431 ORTHO05D008438 9.7e-22 106.7 93 73.1
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 1.1e-20 103.2 68 83.8
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 1.4e-20 102.8 64 85.9
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 1.4e-20 102.8 91 67.0
BcaB05g22609 Brassica carinata HOM05D007431 ORTHO05D008438 1.4e-17 92.8 90 67.8
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 3.2e-17 91.7 89 64.0
BolC3t13774H Brassica oleracea HOM05D007431 ORTHO05D008438 9.3e-17 90.1 75 70.7
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 1.2e-16 89.7 68 75.0
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 1.2e-16 89.7 68 75.0
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 1.2e-16 89.7 68 75.0
BraA03t10450Z Brassica rapa HOM05D007431 ORTHO05D008438 1.6e-16 89.4 64 76.6
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 2.7e-16 88.6 64 78.1
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 4.6e-16 87.8 79 67.1
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 1.0e-15 86.7 75 66.7
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 3.0e-15 85.1 77 68.8
Aa31LG1G12150 Aethionema arabicum HOM05D007431 ORTHO05D008438 5.7e-14 80.9 67 70.1
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 4.8e-13 77.8 74 62.2
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.4e-12 76.3 91 54.9
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 2.4e-12 75.5 87 55.2
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 3.1e-12 75.1 83 55.4
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 6.9e-12 73.9 98 50.0
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 9.1e-12 73.6 74 51.4
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 9.1e-12 73.6 71 54.9
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 2.0e-11 72.4 81 54.3
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 2.0e-11 72.4 74 52.7
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 2.6e-11 72.0 74 51.4
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 5.9e-11 70.9 87 55.2
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 1.0e-10 70.1 79 54.4
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 1.0e-10 70.1 60 61.7
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 1.0e-10 70.1 63 57.1
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 1.3e-10 69.7 81 51.9
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 1.7e-10 69.3 70 52.9
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 2.2e-10 68.9 74 50.0
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 2.9e-10 68.6 84 45.2
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 3.8e-10 68.2 80 46.2
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 3.8e-10 68.2 76 47.4
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 3.8e-10 68.2 71 52.1
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 5.0e-10 67.8 90 47.8
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 6.5e-10 67.4 63 52.4
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 1.4e-09 66.2 81 50.6
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 1.9e-09 65.9 85 44.7
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 1.9e-09 65.9 85 44.7
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 1.9e-09 65.9 76 50.0
Phvul.001G035300 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 2.5e-09 65.5 63 50.8
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 3.2e-09 65.1 56 60.7
AUR62022321 Chenopodium quinoa HOM05D007431 ORTHO05D008438 5.5e-09 64.3 70 50.0
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 5.5e-09 64.3 69 50.7
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 9.4e-09 63.5 69 49.3
DCAR_011227 Daucus carota HOM05D007431 ORTHO05D008438 1.6e-08 62.8 63 49.2
DCAR_011228 Daucus carota HOM05D007431 ORTHO05D008438 1.6e-08 62.8 63 49.2
Eucgr.B01149 Eucalyptus grandis HOM05D007431 ORTHO05D008438 1.6e-08 62.8 74 50.0
ECA238G2926 Erigeron canadensis HOM05D007431 ORTHO05D008438 2.1e-08 62.4 64 53.1
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 2.1e-08 62.4 81 48.1
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 2.1e-08 62.4 89 48.3
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 2.1e-08 62.4 74 45.9
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 2.1e-08 62.4 74 50.0
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 2.7e-08 62.0 70 50.0
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 2.7e-08 62.0 90 43.3
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 2.7e-08 62.0 75 48.0
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 2.7e-08 62.0 91 51.6
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 2.7e-08 62.0 55 54.5
CDE02G3020 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 3.6e-08 61.6 71 49.3
Glyma.17G228900 Glycine max HOM05D007431 ORTHO05D008438 3.6e-08 61.6 75 44.0
Lj3g0021288 Lotus japonicus HOM05D002777 ORTHO05D001516 3.6e-08 61.6 69 46.4
Psat6g020440 Pisum sativum HOM05D007431 ORTHO05D008438 3.6e-08 61.6 90 47.8
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 3.6e-08 61.6 75 44.0
Lj5g0005730 Lotus japonicus HOM05D007431 ORTHO05D008438 4.7e-08 61.2 75 46.7
TPR.G26566 Trifolium pratense HOM05D007431 ORTHO05D008438 4.7e-08 61.2 59 50.8
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 6.1e-08 60.8 83 50.6
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 6.1e-08 60.8 80 46.2
PGR102G0834 Punica granatum HOM05D007431 ORTHO05D008438 6.1e-08 60.8 69 44.9
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 7.9e-08 60.5 81 46.9
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 7.9e-08 60.5 90 45.6
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 1.0e-07 60.1 60 53.3
RhsimUnG0043300 Rhododendron simsii HOM05D002794 ORTHO05D008438 1.0e-07 60.1 89 46.1
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 1.4e-07 59.7 81 46.9
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 1.8e-07 59.3 72 50.0
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 2.3e-07 58.9 89 44.9
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 2.3e-07 58.9 86 41.9
MBI11_g07544_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 2.3e-07 58.9 75 49.3
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 2.3e-07 58.9 75 44.0
MBI15_g23248_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 3.0e-07 58.5 75 49.3
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 3.0e-07 58.5 92 44.6
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 3.9e-07 58.2 71 43.7
Ah.15g096430 Amaranthus hybridus HOM05D007431 ORTHO05D008438 6.7e-07 57.4 71 46.5
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 6.7e-07 57.4 75 48.0
MBI18_g47623_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 8.8e-07 57.0 75 46.7
Nitab4.5_0004839g0050 Nicotiana tabacum HOM05D015294 ORTHO05D018867 1.5e-06 56.2 90 42.2
Sabra19G0107900 Salix brachista HOM05D007431 ORTHO05D008438 1.5e-06 56.2 79 44.3
TWI53G0129 Tripterygium wilfordii HOM05D007431 ORTHO05D008438 1.5e-06 56.2 76 50.0
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 2.0e-06 55.8 87 44.8
CDE01G0792 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 2.6e-06 55.5 87 44.8
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 2.6e-06 55.5 92 39.1
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 2.6e-06 55.5 79 39.2
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 3.3e-06 55.1 86 39.5
MBI15_g23251_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 4.4e-06 54.7 93 41.9
PSO339G3784 Papaver somniferum HOM05D007431 ORTHO05D008438 4.4e-06 54.7 74 39.2
PSO384G2622 Papaver somniferum HOM05D007431 ORTHO05D008438 4.4e-06 54.7 74 39.2
Sed0014169 Sechium edule HOM05D007431 ORTHO05D008438 4.4e-06 54.7 73 50.7
MBI15_g23247_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 5.7e-06 54.3 74 47.3
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 7.4e-06 53.9 86 43.0


User provided reference genes

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