Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 3.9e-91 338.2 178 100.0
AL1G54540 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 1.0e-83 313.5 175 93.1
Sp1g35000 Schrenkiella parvula HOM05D003146 ORTHO05D001819 2.3e-83 312.4 178 91.0
AT1G48020 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 3.3e-82 308.5 175 90.9
Thhalv10011818m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 6.2e-81 304.3 178 88.2
CARHR037660 Cardamine hirsuta HOM05D003146 ORTHO05D001819 4.0e-80 301.6 175 88.6
AL1G54590 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 3.7e-78 295.0 163 93.9
BcaB04g17471 Brassica carinata HOM05D003146 ORTHO05D001819 6.4e-78 294.3 178 86.5
BolC8t47376H Brassica oleracea HOM05D003146 ORTHO05D001819 7.1e-77 290.8 178 85.4
C08p05630 Brassica napus HOM05D003146 ORTHO05D001819 9.2e-77 290.4 178 85.4
A08p05340 Brassica napus HOM05D003146 ORTHO05D001819 2.1e-76 289.3 178 84.3
BraSC267t45946Z Brassica rapa HOM05D003146 ORTHO05D001819 2.1e-76 289.3 178 84.3
BcaC07g37182 Brassica carinata HOM05D003146 ORTHO05D001819 3.9e-75 285.0 178 83.1
BcaB02g11337 Brassica carinata HOM05D003146 ORTHO05D001819 1.1e-74 283.5 176 81.8
BcaC05g27598 Brassica carinata HOM05D003146 ORTHO05D001819 5.6e-74 281.2 176 81.8
C05p35840 Brassica napus HOM05D003146 ORTHO05D001819 5.6e-74 281.2 176 81.8
BolC5t32301H Brassica oleracea HOM05D003146 ORTHO05D001819 5.6e-74 281.2 176 81.8
A05p21240 Brassica napus HOM05D003146 ORTHO05D001819 9.5e-74 280.4 176 81.8
BraA05t21032Z Brassica rapa HOM05D003146 ORTHO05D001819 3.6e-73 278.5 176 81.2
Aa31LG10G5790 Aethionema arabicum HOM05D003146 ORTHO05D001819 9.0e-56 220.7 179 63.1
THA.LOC104816708 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.8e-51 206.5 172 62.2
THA.LOC104825373 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 6.7e-51 204.5 174 61.5
THA.LOC104817105 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 5.6e-50 201.4 172 61.0
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 7.4e-50 201.1 178 58.4
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.4e-45 186.0 180 55.6
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 3.3e-34 149.1 175 46.3
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 6.3e-33 144.8 175 46.3
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 2.4e-32 142.9 175 44.0
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 1.2e-31 140.6 175 45.1
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 4.5e-31 138.7 175 45.1
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 5.0e-30 135.2 175 46.9
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 1.1e-29 134.0 175 42.9
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 9.3e-29 131.0 169 41.4
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 9.3e-29 131.0 169 41.4
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 9.3e-29 131.0 169 41.4
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 9.3e-29 131.0 169 41.4
A01p37050 Brassica napus HOM05D003146 ORTHO05D001819 3.6e-28 129.0 169 41.4
BraA01t03766Z Brassica rapa HOM05D003146 ORTHO05D001819 4.6e-28 128.6 169 40.8
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 1.0e-27 127.5 171 40.9
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.7e-25 120.2 183 40.4
THA.LOC104802648 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.4e-24 117.1 168 39.3
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 1.4e-19 100.5 146 38.4
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 1.8e-19 100.1 184 34.2
Aa31LG10G5700 Aethionema arabicum HOM05D008385 ORTHO05D001819 5.1e-19 98.6 181 35.9
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 5.1e-19 98.6 176 36.9
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 5.1e-19 98.6 163 33.7
A01p37120 Brassica napus HOM05D003146 ORTHO05D001819 3.3e-18 95.9 177 36.2
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 1.3e-17 94.0 154 34.4
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 1.7e-17 93.6 158 34.2
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.7e-17 93.6 183 33.9
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 2.8e-17 92.8 170 35.9
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.7e-17 92.4 159 33.3
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.8e-17 92.0 165 33.9
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.8e-17 92.0 171 33.3
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-16 90.1 159 34.0
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.1e-16 89.4 157 32.5
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.1e-16 89.0 171 33.3
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.9e-16 88.2 164 31.7
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.5e-15 87.0 159 32.1
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.5e-15 87.0 164 32.9
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.5e-15 87.0 164 32.9
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.5e-15 87.0 169 32.5
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.4e-15 85.9 171 32.2
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-14 84.3 163 31.9
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-14 84.3 163 31.9
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.3e-14 84.0 163 31.9
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.7e-14 83.6 140 33.6
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-14 83.2 169 31.4
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.9e-14 82.8 164 31.7
Ca_06775_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 5.0e-14 82.0 132 33.3
MELO3C027828.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.0e-14 82.0 161 31.7
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.0e-14 82.0 164 32.9
Glyma.15G207000 Glycine max HOM05D007995 ORTHO05D001819 5.0e-14 82.0 166 33.1
Glyma.15G207100 Glycine max HOM05D007995 ORTHO05D001819 5.0e-14 82.0 166 33.1
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.5e-14 81.6 159 30.8
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.5e-14 81.3 161 31.1
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 8.5e-14 81.3 170 32.4
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-13 80.1 165 30.3
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.9e-13 80.1 163 31.3
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.9e-13 80.1 163 31.3
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.9e-13 80.1 163 31.3
PGR004G1752 Punica granatum HOM05D003146 ORTHO05D001819 1.9e-13 80.1 158 32.9
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.5e-13 79.7 163 30.1
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.5e-13 79.7 165 30.9
MELO3C035196.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.2e-13 79.3 155 32.9
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.2e-13 79.3 163 31.3
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.2e-13 79.3 163 31.3
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.2e-13 79.3 163 31.3
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.2e-13 79.3 163 31.3
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.2e-13 79.3 163 31.3
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.2e-13 79.0 159 30.2
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 4.2e-13 79.0 167 31.1
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 5.5e-13 78.6 170 34.7
Aa31LG10G5710 Aethionema arabicum HOM05D008385 ORTHO05D010806 7.2e-13 78.2 153 34.6
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 7.2e-13 78.2 167 32.3
TPR.G16193 Trifolium pratense HOM05D007995 ORTHO05D001819 7.2e-13 78.2 170 31.8
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.4e-13 77.8 159 29.6
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.4e-13 77.8 159 30.8
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 9.4e-13 77.8 176 34.1
C01p47000 Brassica napus HOM05D003146 ORTHO05D001819 1.2e-12 77.4 146 34.9
BolC1t04668H Brassica oleracea HOM05D003146 ORTHO05D001819 1.2e-12 77.4 146 34.9
QL06p013377 Quercus lobata HOM05D003146 ORTHO05D001819 1.2e-12 77.4 184 28.3
BcaC09g48680 Brassica carinata HOM05D003146 ORTHO05D001819 1.6e-12 77.0 146 34.9
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 2.1e-12 76.6 174 31.6
MELO3C030077.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.6e-12 75.9 159 30.2
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 3.6e-12 75.9 144 30.6
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 3.6e-12 75.9 176 29.0
A03p29810 Brassica napus HOM05D008385 ORTHO05D001819 4.7e-12 75.5 182 27.5
ClCG06G004590 Citrullus lanatus HOM05D003146 ORTHO05D001819 4.7e-12 75.5 157 29.3
MELO3C034867.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.7e-12 75.5 170 29.4
TPR.G28273 Trifolium pratense HOM05D007995 ORTHO05D001819 6.1e-12 75.1 171 29.8
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.0e-12 74.7 159 28.9
Medtr4g025010 Medicago truncatula HOM05D007995 ORTHO05D001819 8.0e-12 74.7 166 31.3
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 8.0e-12 74.7 164 29.9
MELO3C032509.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-11 74.3 159 29.6
MELO3C027044.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-11 73.9 170 29.4
BraA01t03769Z Brassica rapa HOM05D003146 ORTHO05D001819 1.8e-11 73.6 125 35.2
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 1.8e-11 73.6 169 29.6
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 3.0e-11 72.8 171 29.8
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 3.9e-11 72.4 166 33.7
Actinidia18487 Actinidia chinensis HOM05D003146 ORTHO05D001819 5.2e-11 72.0 115 39.1
TPR.G32889 Trifolium pratense HOM05D007995 ORTHO05D001819 6.7e-11 71.6 166 27.7
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 8.8e-11 71.2 151 30.5
MELO3C019686.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.5e-10 70.5 159 28.9
Medtr8g032810 Medicago truncatula HOM05D007995 ORTHO05D001819 1.5e-10 70.5 171 29.2
Peaxi162Scf00126g00017 Petunia axillaris HOM05D003146 ORTHO05D001819 2.0e-10 70.1 173 31.8
Thhalv10012028m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 2.6e-10 69.7 158 28.5
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 3.3e-10 69.3 150 28.7
MELO3C028053.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.3e-10 69.3 137 35.0
AT1G11362 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 4.4e-10 68.9 175 25.7
VMungo0720G2167 Vigna mungo HOM05D007995 ORTHO05D001819 5.7e-10 68.6 180 28.9
MELO3C001272.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.4e-10 68.2 132 31.8
AT3G27999 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 9.7e-10 67.8 172 29.1
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.7e-10 67.8 118 33.1
Phvul.007G271600 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 9.7e-10 67.8 174 28.2
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 9.7e-10 67.8 142 29.6
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 9.7e-10 67.8 151 27.2
Phvul.007G271650 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 1.7e-09 67.0 139 29.5
Lalb_Chr16g0386201 Lupinus albus HOM05D007995 ORTHO05D001819 2.2e-09 66.6 176 33.0
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 2.2e-09 66.6 151 27.2
Lalb_Chr16g0386221 Lupinus albus HOM05D007995 ORTHO05D001819 2.8e-09 66.2 176 32.4
Sed0025474 Sechium edule HOM05D003146 ORTHO05D001819 2.8e-09 66.2 166 25.9
Hma1.2p1_1096F.1_g256660 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 4.8e-09 65.5 143 31.5
Psat1g086800 Pisum sativum HOM05D007995 ORTHO05D001819 4.8e-09 65.5 174 30.5
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 4.8e-09 65.5 121 30.6
Medtr6g023935 Medicago truncatula HOM05D007995 ORTHO05D001819 8.2e-09 64.7 165 28.5
MELO3C027589.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-08 64.3 132 30.3
QL08p052685 Quercus lobata HOM05D003146 ORTHO05D001819 1.1e-08 64.3 172 29.7
QL08p052692 Quercus lobata HOM05D003146 ORTHO05D001819 1.1e-08 64.3 172 29.7
CsaV3_6G020170 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-08 63.9 124 32.3
A01p14680 Brassica napus HOM05D008385 ORTHO05D010806 3.1e-08 62.8 184 26.1
C01p18170 Brassica napus HOM05D008385 ORTHO05D010806 3.1e-08 62.8 184 26.1
C01p18190 Brassica napus HOM05D008385 ORTHO05D010806 3.1e-08 62.8 184 26.1
BolC1t01744H Brassica oleracea HOM05D008385 ORTHO05D010806 3.1e-08 62.8 184 26.1
Medtr6g023915 Medicago truncatula HOM05D007995 ORTHO05D001819 3.1e-08 62.8 165 27.9
CsaV3_UNG044260 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.1e-08 62.4 93 34.4
CsaV3_UNG083670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.1e-08 62.4 93 34.4
MD16G1147400 Malus domestica HOM05D003146 ORTHO05D001819 7.0e-08 61.6 137 29.2
MELO3C034826.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.0e-07 60.1 86 34.9
Lj3g0018744 Lotus japonicus HOM05D007995 ORTHO05D001819 2.0e-07 60.1 170 27.1
MELO3C021270.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.6e-07 59.7 171 29.2
Actinidia14750 Actinidia chinensis HOM05D009438 ORTHO05D010870 3.5e-07 59.3 144 25.7
BraA01t01408Z Brassica rapa HOM05D008385 ORTHO05D010806 3.5e-07 59.3 184 25.5
TAR073G0001 Trochodendron aralioides HOM05D001445 ORTHO05D001261 3.5e-07 59.3 166 28.9
Hma1.2p1_3273F.1_g334810 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 5.9e-07 58.5 130 32.3
Hma1.2p1_3469F.1_g336200 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 5.9e-07 58.5 130 32.3
Carub.0008s1110 Capsella rubella HOM05D008385 ORTHO05D010806 7.7e-07 58.2 180 26.7
Ca_31166_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 7.7e-07 58.2 134 29.1
Dinv22851 Davidia involucrata HOM05D009438 ORTHO05D010870 7.7e-07 58.2 148 30.4
Dinv22852 Davidia involucrata HOM05D009438 ORTHO05D010870 7.7e-07 58.2 148 30.4
CsaV3_6G021230 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.0e-06 57.8 160 26.2
Glyma.17G044900 Glycine max HOM05D001445 ORTHO05D003404 2.2e-06 56.6 157 29.3
Nn1g00664 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.2e-06 56.6 177 24.3
QL04p005594 Quercus lobata HOM05D003146 ORTHO05D001819 2.2e-06 56.6 151 23.8
MELO3C028207.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-06 56.2 101 29.7
CAN.G111.34 Capsicum annuum HOM05D011410 ORTHO05D013015 3.8e-06 55.8 128 29.7
Actinidia28299 Actinidia chinensis HOM05D003146 ORTHO05D001819 5.0e-06 55.5 78 39.7
CAN.G338.43 Capsicum annuum HOM05D003146 ORTHO05D001819 5.0e-06 55.5 165 26.7
Medtr6g024020 Medicago truncatula HOM05D007995 ORTHO05D001819 5.0e-06 55.5 172 25.6
BraA01t01407Z Brassica rapa HOM05D008385 ORTHO05D010806 8.5e-06 54.7 184 25.0
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 8.5e-06 54.7 131 26.7


User provided reference genes

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