Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 2.8e-140 501.9 249 100.0
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.9e-137 491.9 249 97.6
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.3e-129 466.5 250 93.6
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.7e-129 466.1 250 92.8
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 5.5e-128 461.1 249 92.0
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.8e-126 456.1 249 90.8
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 2.8e-124 448.7 249 90.0
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.7e-122 442.2 260 85.8
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 3.2e-120 435.3 273 82.8
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 3.2e-120 435.3 273 82.8
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 4.2e-120 434.9 242 90.9
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 4.2e-120 434.9 242 90.9
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 5.5e-120 434.5 242 90.5
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 5.9e-114 414.5 249 82.3
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 5.9e-114 414.5 249 82.3
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.3e-113 413.3 249 81.9
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.3e-113 413.3 249 81.9
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 2.3e-113 412.5 249 81.9
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.3e-113 412.5 249 82.3
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 2.9e-113 412.1 249 81.5
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-112 409.8 249 81.9
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 9.5e-112 407.1 249 79.5
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 9.5e-112 407.1 250 79.2
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.8e-111 405.6 249 80.3
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 4.7e-111 404.8 249 81.1
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 6.1e-111 404.4 249 80.3
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 5.0e-105 384.8 250 72.8
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 2.1e-103 379.4 248 72.2
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.1e-103 379.4 250 75.2
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.8e-103 379.0 249 74.7
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 8.0e-103 377.5 250 74.8
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.4e-102 376.7 250 73.2
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 2.3e-102 375.9 250 73.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 4.0e-102 375.2 249 72.7
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 8.9e-102 374.0 248 73.0
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.2e-101 373.6 250 74.0
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.6e-101 372.5 250 72.8
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.6e-101 372.5 251 73.7
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 3.4e-101 372.1 249 71.5
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 4.4e-101 371.7 292 67.5
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 4.4e-101 371.7 240 72.5
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 5.7e-101 371.3 248 73.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 9.8e-101 370.5 249 71.9
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 9.8e-101 370.5 250 74.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.3e-100 370.2 250 72.4
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 2.9e-100 369.0 250 73.6
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 3.7e-100 368.6 248 71.0
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.9e-100 368.2 250 72.8
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 8.3e-100 367.5 250 72.8
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.1e-99 367.1 249 71.1
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.1e-99 367.1 252 70.6
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.1e-99 367.1 252 69.8
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.1e-99 367.1 249 70.7
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.4e-99 366.7 250 71.6
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.8e-99 366.3 250 70.4
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.4e-99 365.9 250 71.6
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.4e-99 365.9 252 71.4
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 3.2e-99 365.5 249 71.1
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 7.0e-99 364.4 250 71.2
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 7.0e-99 364.4 250 71.2
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 9.2e-99 364.0 249 71.5
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.2e-98 363.6 249 73.1
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.2e-98 363.6 249 73.1
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.6e-98 363.2 249 69.9
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.6e-98 363.2 251 70.9
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 2.0e-98 362.8 249 71.9
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.0e-98 362.8 245 70.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.0e-98 362.8 245 70.6
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.7e-98 362.5 251 70.5
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 2.7e-98 362.5 248 71.0
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 3.5e-98 362.1 252 70.6
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 4.6e-98 361.7 250 70.4
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 4.6e-98 361.7 250 70.0
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 4.6e-98 361.7 251 71.7
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 5.9e-98 361.3 252 70.6
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 5.9e-98 361.3 250 72.4
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.0e-97 360.5 252 68.7
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.0e-97 360.5 245 70.2
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.3e-97 360.1 250 71.6
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.3e-97 360.1 252 68.7
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-97 359.8 249 72.3
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.7e-97 359.8 251 72.5
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.7e-97 359.8 249 71.1
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 2.3e-97 359.4 249 71.9
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.0e-97 359.0 249 71.1
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 3.0e-97 359.0 250 70.4
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 5.0e-97 358.2 243 72.0
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 6.6e-97 357.8 250 68.4
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 8.6e-97 357.5 249 71.9
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 9.5e-96 354.0 251 68.9
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.6e-95 353.2 250 68.8
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.1e-95 352.8 249 67.9
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.6e-95 352.1 252 67.9
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 4.7e-95 351.7 252 67.9
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 6.2e-95 351.3 250 70.0
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 8.0e-95 350.9 252 67.5
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.4e-94 350.1 252 68.7
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 2.6e-93 345.9 250 66.4
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.6e-93 345.9 252 67.5
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 3.7e-92 342.0 253 67.6
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 4.9e-92 341.7 250 66.0
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.9e-92 341.7 242 68.6
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 8.3e-92 340.9 250 65.6
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.1e-91 340.5 242 68.6
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.1e-91 340.5 249 67.9
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 2.4e-91 339.3 252 67.5
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.1e-91 338.6 250 65.2
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 7.0e-91 337.8 253 65.6
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-90 337.0 252 65.9
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.2e-90 337.0 251 65.7
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.6e-90 336.7 244 67.6
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 2.0e-90 336.3 246 65.9
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.6e-90 335.1 256 66.8
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.3e-89 333.6 249 66.3
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 3.9e-89 332.0 294 57.8
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 4.3e-88 328.6 250 66.4
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 5.6e-88 328.2 253 66.0
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 2.3e-86 322.8 197 80.7
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 4.0e-86 322.0 225 69.8
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.5e-85 320.1 253 62.8
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.6e-85 319.3 249 64.7
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 5.8e-85 318.2 239 64.4
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 7.1e-83 311.2 184 80.4
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 9.2e-83 310.8 250 63.2
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 2.5e-80 302.8 250 63.6
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.6e-79 300.1 174 82.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.5e-77 293.5 246 61.0
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 3.4e-77 292.4 175 77.1
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 9.2e-75 284.3 252 59.9
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.9e-72 276.6 249 59.0
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.1e-70 270.8 153 82.4
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 9.9e-69 264.2 151 84.1
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.3e-68 263.8 155 81.9
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.4e-62 243.8 178 68.0
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 6.9e-62 241.5 185 66.5
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 2.2e-60 236.5 191 55.0
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 6.0e-58 228.4 180 58.9
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.6e-55 220.3 190 63.7
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.6e-55 220.3 190 63.7
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 9.0e-54 214.5 175 61.7
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.9e-48 196.8 188 55.3
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 3.8e-44 182.6 110 76.4
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 4.9e-44 182.2 174 48.3
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.2e-39 166.8 88 89.8
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 6.5e-36 155.2 132 56.8
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 3.2e-27 126.3 96 68.8
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.2e-26 124.4 63 87.3
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.8e-25 120.6 73 76.7
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.3e-25 120.2 174 35.6
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 3.3e-24 116.3 99 61.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 3.3e-24 116.3 99 61.6
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 8.2e-23 111.7 108 60.2
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.1e-22 111.3 75 77.3
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.0e-21 107.1 168 35.1
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 2.2e-15 87.0 94 56.4
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 7.0e-14 82.0 83 56.6
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.5e-11 74.3 182 30.8
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 3.0e-09 66.6 52 57.7
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 1.5e-08 64.3 167 30.5
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 2.0e-08 63.9 34 85.3
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.7e-07 60.8 47 63.8
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 8.2e-07 58.5 54 55.6
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 3.1e-06 56.6 203 26.6
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 7.0e-06 55.5 45 60.0


User provided reference genes

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