Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.2e-108 394.0 248 100.0
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.2e-108 394.0 248 100.0
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 2.3e-102 375.9 248 85.1
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 5.9e-98 361.3 251 83.3
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.8e-95 352.4 232 86.6
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.6e-95 352.1 247 82.6
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.8e-92 342.4 248 77.8
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 2.8e-92 342.4 250 79.6
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.7e-92 342.0 250 77.6
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 6.3e-92 341.3 249 78.3
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.3e-92 341.3 250 79.2
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 6.3e-92 341.3 250 79.2
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 6.3e-92 341.3 247 77.3
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 6.3e-92 341.3 250 79.2
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 8.3e-92 340.9 250 78.0
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.4e-91 340.1 250 79.2
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.8e-91 339.7 250 78.4
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 3.1e-91 339.0 250 78.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.1e-91 339.0 250 78.0
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 4.1e-91 338.6 250 77.6
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.1e-91 338.6 250 78.0
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.1e-91 338.6 250 78.0
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 5.4e-91 338.2 250 77.2
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 5.4e-91 338.2 250 78.4
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 7.0e-91 337.8 250 78.0
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.2e-90 337.0 250 76.8
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.6e-90 336.7 250 77.6
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.6e-90 336.7 249 77.9
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.6e-90 336.7 250 78.4
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.0e-90 336.3 250 77.6
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 2.0e-90 336.3 250 77.6
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 2.0e-90 336.3 250 77.6
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.7e-90 335.9 250 76.8
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 2.7e-90 335.9 249 76.3
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 2.7e-90 335.9 251 75.7
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 3.5e-90 335.5 250 76.4
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 4.5e-90 335.1 250 76.8
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 4.5e-90 335.1 250 77.2
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 5.9e-90 334.7 250 77.2
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 7.8e-90 334.3 249 77.1
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 7.8e-90 334.3 250 76.8
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.3e-89 333.6 250 76.4
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 1.3e-89 333.6 247 78.5
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.3e-89 333.6 248 77.0
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.7e-89 333.2 245 78.0
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 2.3e-89 332.8 250 76.8
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.9e-89 332.4 250 77.2
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.9e-89 332.4 249 77.9
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.8e-89 332.0 250 76.8
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.0e-89 331.6 250 76.8
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 6.6e-89 331.3 250 75.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 6.6e-89 331.3 250 76.8
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 8.6e-89 330.9 256 74.6
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 8.6e-89 330.9 250 76.8
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 8.6e-89 330.9 248 75.8
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.1e-88 330.5 251 74.5
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.1e-88 330.5 250 75.2
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.5e-88 330.1 246 78.0
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.3e-88 328.9 250 74.8
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.3e-88 328.9 250 74.8
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.3e-88 328.9 250 76.0
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 7.3e-88 327.8 248 75.4
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 7.3e-88 327.8 250 74.4
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.3e-88 327.8 250 74.4
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 7.3e-88 327.8 248 75.0
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 7.3e-88 327.8 250 74.8
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 7.3e-88 327.8 250 74.4
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 9.5e-88 327.4 250 74.4
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.6e-87 326.6 250 74.4
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.1e-87 326.2 248 74.2
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.8e-87 325.9 246 76.4
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 2.8e-87 325.9 249 73.9
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 2.8e-87 325.9 249 73.9
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 3.6e-87 325.5 250 74.0
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 3.6e-87 325.5 250 74.4
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 6.1e-87 324.7 244 75.8
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 6.1e-87 324.7 245 75.1
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 8.0e-87 324.3 248 73.8
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.4e-86 323.6 250 80.0
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.0e-86 322.0 249 73.1
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 5.2e-86 321.6 250 73.6
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.6e-85 319.3 295 67.8
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.4e-85 318.9 234 78.2
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.4e-85 318.5 234 78.2
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 4.4e-85 318.5 251 74.1
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 4.4e-85 318.5 248 73.0
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 9.8e-85 317.4 250 72.4
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.3e-84 317.0 272 68.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.9e-84 315.1 247 74.9
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 8.3e-84 314.3 234 78.2
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.9e-83 313.2 292 65.1
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.1e-83 312.0 248 71.0
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.2e-82 310.5 291 64.9
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 2.0e-82 309.7 243 74.1
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 4.6e-82 308.5 230 77.4
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 8.6e-81 304.3 229 76.4
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.5e-80 303.5 227 77.1
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 7.3e-80 301.2 250 71.2
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 2.1e-79 299.7 235 73.6
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-79 299.7 283 67.8
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 2.8e-79 299.3 244 67.2
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 6.2e-79 298.1 251 69.7
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.8e-78 296.6 242 66.9
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.8e-78 296.6 250 66.4
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.0e-78 295.4 246 70.3
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-77 293.5 233 74.7
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 2.2e-76 289.7 272 61.0
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 4.9e-76 288.5 291 57.4
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 4.9e-76 288.5 246 62.2
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 3.9e-73 278.9 240 67.5
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.6e-73 278.1 318 53.1
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 3.6e-71 272.3 246 63.8
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 6.2e-71 271.6 256 62.1
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.1e-70 270.8 246 59.3
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 8.9e-70 267.7 224 73.7
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.2e-69 267.3 238 71.0
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-68 263.8 238 70.6
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.3e-68 263.8 258 61.6
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 3.9e-65 252.3 220 71.8
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 4.3e-64 248.8 195 76.4
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.2e-63 247.3 195 75.4
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 8.1e-63 244.6 174 97.1
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.4e-62 243.0 230 63.9
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 6.0e-58 228.4 258 53.5
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 4.2e-51 205.7 106 98.1
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 3.5e-50 202.6 138 76.8
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 4.8e-47 192.2 132 76.5
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.1e-46 191.0 244 47.1
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 2.4e-46 189.9 253 47.8
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-43 181.0 299 49.8
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 6.0e-42 175.3 145 73.8
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.4e-38 164.1 97 87.6
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 4.5e-37 159.1 90 90.0
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 5.8e-37 158.7 125 64.8
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.1e-30 137.9 81 84.0
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.5e-29 132.5 151 56.3
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.5e-26 122.9 102 65.7
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.1e-24 117.9 74 79.7
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.1e-24 117.9 74 79.7
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.1e-24 117.9 76 76.3
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 8.2e-23 111.7 65 78.5
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.4e-19 100.9 58 81.0
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 7.2e-19 98.6 152 44.1
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.2e-18 97.8 102 55.9
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.2e-18 97.8 142 40.8
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.3e-17 93.6 147 42.2
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 6.7e-17 92.0 149 45.6
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 8.8e-17 91.7 147 41.5
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 8.2e-15 85.1 62 93.5
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.9e-14 82.0 62 87.1
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.9e-14 82.0 147 37.4
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 6.9e-14 82.0 231 34.6
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 9.1e-14 81.6 152 36.8
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 4.5e-13 79.3 43 88.4
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.8e-12 76.3 45 84.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.0e-12 75.9 44 81.8
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 5.0e-12 75.9 66 65.2
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.7e-10 70.1 150 38.7
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.6e-10 69.7 152 36.8
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 7.9e-10 68.6 37 89.2
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.0e-08 63.9 140 41.4


User provided reference genes

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