Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.7e-86 320.9 158 100.0
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.7e-86 320.9 158 100.0
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.8e-85 318.5 158 99.4
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 7.0e-44 181.0 157 61.1
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.2e-42 176.0 153 60.1
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 6.5e-42 174.5 153 62.1
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-41 173.7 153 59.5
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-41 173.7 153 59.5
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.1e-41 173.7 153 61.4
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.5e-41 173.3 153 61.4
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.9e-41 172.9 153 58.8
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.9e-41 172.9 153 61.4
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.9e-41 172.9 153 61.4
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 7.2e-41 171.0 153 60.8
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.6e-40 169.9 153 60.8
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.6e-40 169.9 153 60.1
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.6e-40 169.9 154 59.1
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 2.7e-40 169.1 154 60.4
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 2.7e-40 169.1 154 60.4
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 3.6e-40 168.7 153 59.5
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 3.6e-40 168.7 153 59.5
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 3.6e-40 168.7 154 59.7
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 3.6e-40 168.7 146 63.0
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 4.7e-40 168.3 154 59.7
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 4.7e-40 168.3 154 59.7
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 4.7e-40 168.3 154 59.7
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 8.0e-40 167.5 153 59.5
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 8.0e-40 167.5 154 59.7
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 8.0e-40 167.5 154 60.4
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 8.0e-40 167.5 153 60.1
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.0e-39 167.2 154 59.7
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.0e-39 167.2 154 59.7
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.0e-39 167.2 153 59.5
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.4e-39 166.8 154 59.1
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 1.4e-39 166.8 154 59.7
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 1.4e-39 166.8 154 59.7
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 1.4e-39 166.8 154 59.7
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.4e-39 166.8 154 59.1
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.8e-39 166.4 154 60.4
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.8e-39 166.4 154 58.4
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.0e-39 165.6 153 60.1
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 3.0e-39 165.6 153 59.5
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.0e-39 165.6 153 59.5
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 4.0e-39 165.2 153 60.1
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 4.0e-39 165.2 154 59.1
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 5.2e-39 164.9 157 58.0
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 5.2e-39 164.9 153 59.5
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 6.8e-39 164.5 154 58.4
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 8.8e-39 164.1 154 59.1
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.5e-38 163.3 154 58.4
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.5e-38 163.3 153 59.5
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 2.0e-38 162.9 154 57.8
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.0e-38 162.9 154 58.4
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 3.4e-38 162.2 154 57.1
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 3.4e-38 162.2 153 57.5
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 3.4e-38 162.2 154 56.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 3.4e-38 162.2 154 57.8
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 4.4e-38 161.8 153 56.9
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 4.4e-38 161.8 153 58.8
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 4.4e-38 161.8 154 58.4
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 4.4e-38 161.8 154 54.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 5.7e-38 161.4 154 55.2
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 7.5e-38 161.0 154 57.8
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 7.5e-38 161.0 154 57.8
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 9.8e-38 160.6 154 57.1
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 9.8e-38 160.6 154 57.1
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.3e-37 160.2 146 57.5
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 1.3e-37 160.2 154 57.8
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.3e-37 160.2 157 56.1
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.3e-37 160.2 157 55.4
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.3e-37 160.2 154 56.5
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.3e-37 160.2 154 56.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.3e-37 160.2 154 58.4
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.7e-37 159.8 154 58.4
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.7e-37 159.8 157 56.1
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.7e-37 159.8 157 56.1
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 1.7e-37 159.8 154 57.1
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.7e-37 159.8 154 55.2
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.7e-37 159.8 154 58.4
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.2e-37 159.5 153 56.9
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 2.2e-37 159.5 154 57.1
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 2.8e-37 159.1 154 57.1
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.7e-37 158.7 153 57.5
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.7e-37 158.7 153 57.5
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 3.7e-37 158.7 153 57.5
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.7e-37 158.7 154 57.1
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 3.7e-37 158.7 154 57.1
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 3.7e-37 158.7 155 58.7
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.7e-37 158.7 157 55.4
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 4.9e-37 158.3 153 58.2
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 8.3e-37 157.5 154 55.8
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 8.3e-37 157.5 154 56.5
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 8.3e-37 157.5 168 54.2
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 8.3e-37 157.5 153 58.2
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.1e-36 157.1 154 56.5
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.4e-36 156.8 154 56.5
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.8e-36 156.4 154 53.2
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.8e-36 156.4 154 56.5
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 4.1e-36 155.2 154 57.1
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 4.1e-36 155.2 153 56.2
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 4.1e-36 155.2 153 55.6
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 5.4e-36 154.8 154 56.5
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 5.4e-36 154.8 154 55.8
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 5.4e-36 154.8 154 53.9
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 7.0e-36 154.5 154 55.8
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 9.2e-36 154.1 154 55.8
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 9.2e-36 154.1 154 53.9
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.7e-35 152.5 153 58.2
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.7e-35 152.5 154 55.2
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 4.5e-35 151.8 153 54.2
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 5.9e-35 151.4 154 54.5
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.0e-34 150.6 175 49.7
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.3e-34 150.2 153 54.9
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.3e-34 150.2 154 53.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.7e-34 149.8 154 53.9
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.7e-34 149.8 154 54.5
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.7e-34 149.8 153 56.2
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 2.9e-34 149.1 153 55.6
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.5e-33 146.0 185 48.1
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.3e-33 145.6 177 49.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.2e-32 143.7 192 47.4
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.0e-31 138.7 105 66.7
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.5e-30 136.7 218 41.7
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 4.4e-30 135.2 154 46.8
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 4.4e-30 135.2 126 57.1
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 7.5e-30 134.4 157 48.4
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 9.8e-30 134.0 154 46.8
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 6.4e-29 131.3 127 55.1
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.4e-28 129.4 112 60.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 2.0e-27 126.3 126 52.4
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 4.6e-27 125.2 132 52.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.5e-25 120.2 157 43.3
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.9e-25 119.8 114 57.9
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.4e-23 113.6 89 66.3
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 2.3e-23 112.8 162 44.4
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 3.4e-22 109.0 89 64.0
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 3.4e-22 109.0 89 64.0
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 3.4e-22 109.0 89 64.0
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 5.4e-20 101.7 91 59.3
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.2e-19 100.5 116 49.1
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 2.7e-19 99.4 105 54.3
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 6.0e-19 98.2 119 47.1
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 7.8e-19 97.8 72 68.1
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.8e-19 97.8 152 44.1
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.5e-17 93.6 70 65.7
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 2.5e-17 92.8 70 65.7
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.5e-17 92.8 70 65.7
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.5e-17 92.8 70 65.7
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 2.2e-13 79.7 64 60.9
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 3.3e-09 65.9 90 43.3
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 3.3e-09 65.9 50 66.0
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.4e-07 60.5 97 42.3


User provided reference genes

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