Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.3e-236 822.8 446 100.0
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 4.4e-192 674.9 448 84.4
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 2.2e-183 646.0 453 78.1
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 2.1e-170 602.8 457 78.3
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 6.6e-164 581.3 456 76.5
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-160 569.3 463 70.4
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-160 569.3 463 70.4
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.2e-146 523.9 455 70.8
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 2.1e-146 523.1 454 67.6
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 5.2e-145 518.5 448 66.3
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.2e-144 517.3 452 67.5
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.4e-142 510.4 452 67.9
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 4.6e-141 505.4 457 64.3
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 2.3e-140 503.1 454 67.0
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 4.3e-139 498.8 458 67.0
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.4e-137 493.8 451 65.2
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 4.4e-136 488.8 453 65.6
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.3e-135 487.3 453 65.6
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.7e-135 485.7 453 64.5
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.7e-135 485.7 458 65.9
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 9.2e-134 481.1 457 64.8
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.1e-133 479.9 452 64.2
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 5.1e-132 475.3 472 59.1
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.1e-132 475.3 454 61.2
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.8e-129 466.8 469 61.0
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 5.2e-129 465.3 457 62.4
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 2.0e-128 463.4 456 62.7
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.4e-128 462.6 452 62.8
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 5.8e-128 461.8 384 75.3
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.2e-127 459.9 450 64.0
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 4.2e-126 455.7 459 61.4
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 1.0e-124 451.1 452 59.7
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.3e-124 450.7 454 59.0
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.3e-124 449.9 463 59.0
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 3.0e-124 449.5 457 60.0
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 6.6e-124 448.4 465 61.5
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.3e-123 446.0 451 62.7
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 6.2e-122 441.8 451 62.1
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 6.9e-121 438.3 474 55.3
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.2e-120 437.6 450 60.7
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 2.0e-120 436.8 453 59.8
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 5.8e-120 435.3 455 62.6
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 7.6e-120 434.9 452 61.3
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 1.1e-118 431.0 462 58.2
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.4e-118 430.6 457 56.5
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.0e-116 424.5 456 58.3
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.0e-116 424.5 466 56.9
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.7e-116 423.7 452 59.3
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 3.9e-116 422.5 458 56.8
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.5e-115 420.6 450 60.0
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.5e-115 420.6 450 60.0
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 4.3e-115 419.1 459 58.6
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 5.6e-115 418.7 453 59.2
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 3.6e-114 416.0 459 58.2
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 8.1e-114 414.8 447 57.0
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 9.0e-113 411.4 451 58.1
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.6e-112 409.8 456 57.0
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.5e-112 409.1 417 60.2
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.5e-112 409.1 433 59.8
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.1e-110 404.4 232 85.8
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.3e-108 397.5 433 59.8
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 2.5e-107 393.3 446 52.5
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.3e-106 391.0 428 60.0
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 1.4e-105 387.5 425 50.8
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 4.5e-104 382.5 426 54.7
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 6.4e-103 378.6 463 54.0
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 8.2e-98 361.7 450 53.6
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.4e-94 350.9 447 50.3
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.2e-88 331.3 448 50.9
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 5.9e-88 328.9 456 52.6
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 6.3e-82 308.9 434 50.7
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 7.7e-80 302.0 466 48.9
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.9e-79 300.1 444 43.5
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.7e-77 292.7 443 47.4
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 9.7e-67 258.5 369 52.8
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 7.0e-65 252.3 448 43.5
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 7.7e-64 248.8 470 44.7
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.4e-57 228.0 469 45.2
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.0e-52 211.8 151 68.9
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.0e-52 211.8 151 68.9
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.4e-49 201.4 469 38.4
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 1.7e-42 177.9 231 44.6
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 1.7e-42 177.9 231 44.6
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.2e-42 177.6 180 50.0
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.6e-40 171.4 192 49.5
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.0e-40 171.0 152 57.2
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.7e-40 170.6 150 55.3
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.5e-40 170.2 157 53.5
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 7.8e-40 169.1 282 41.5
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.3e-39 167.5 437 38.2
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 2.9e-39 167.2 437 38.2
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 2.9e-39 167.2 450 33.1
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 3.9e-39 166.8 130 58.5
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 5.0e-39 166.4 434 36.4
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 6.6e-39 166.0 432 35.2
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.9e-38 164.5 165 50.9
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.9e-38 164.5 138 54.3
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 2.5e-38 164.1 130 57.7
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 3.3e-38 163.7 136 53.7
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 3.3e-38 163.7 431 34.8
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 4.3e-38 163.3 292 37.7
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 5.6e-38 162.9 310 37.7
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 5.6e-38 162.9 127 58.3
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 7.3e-38 162.5 278 38.5
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 7.3e-38 162.5 127 56.7
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 9.5e-38 162.2 155 51.6
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.2e-37 161.8 152 50.7
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.6e-37 161.4 279 38.0
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.1e-37 161.0 447 34.2
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 2.8e-37 160.6 445 32.6
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 3.6e-37 160.2 126 56.3
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 4.7e-37 159.8 126 57.9
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 4.7e-37 159.8 127 56.7
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 6.1e-37 159.5 282 38.7
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.0e-36 158.7 277 37.9
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.4e-36 158.3 154 50.6
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.4e-36 158.3 154 50.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.8e-36 157.9 447 34.5
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.8e-36 157.9 276 38.8
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 1.8e-36 157.9 437 33.2
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 2.3e-36 157.5 426 30.8
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.3e-36 157.5 423 33.8
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 5.2e-36 156.4 434 33.2
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 8.9e-36 155.6 213 41.8
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-35 155.2 126 54.0
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-35 155.2 126 54.0
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.5e-35 154.8 430 38.8
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.0e-35 154.5 124 54.8
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 2.0e-35 154.5 78 97.4
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.6e-35 154.1 164 48.8
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.4e-35 153.3 251 41.8
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 4.4e-35 153.3 447 34.5
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 5.8e-35 152.9 461 36.0
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 7.5e-35 152.5 456 35.5
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 7.5e-35 152.5 126 55.6
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 7.5e-35 152.5 126 53.2
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 7.5e-35 152.5 289 35.6
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.7e-34 151.4 320 35.9
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.7e-34 151.4 282 38.7
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.7e-34 150.2 298 38.9
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.7e-34 150.2 328 36.6
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.7e-34 150.2 449 33.9
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.9e-34 149.8 304 37.5
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 4.9e-34 149.8 436 36.5
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.4e-33 148.3 433 35.1
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 1.9e-33 147.9 295 38.0
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 3.2e-33 147.1 122 53.3
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 4.1e-33 146.7 285 37.2
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 5.4e-33 146.4 454 29.7
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 2.0e-32 144.4 433 35.1
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.7e-32 144.1 427 28.3
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.6e-32 143.3 276 35.9
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 3.9e-31 140.2 414 32.9
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 5.0e-31 139.8 408 31.1
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 8.6e-31 139.0 435 34.0
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.1e-30 138.7 428 32.2
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 2.0e-27 127.9 139 54.0
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 9.2e-25 119.0 379 38.3
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 8.4e-10 69.3 203 34.5
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 1.2e-08 65.5 59 54.2
Glyma.15G117800 Glycine max HOM05D004237 ORTHO05D005002 2.7e-08 64.3 71 52.1
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.6e-07 59.7 97 42.3
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-06 58.9 85 41.2
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 5.6e-06 56.6 116 40.5


User provided reference genes

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