Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.5e-231 805.8 408 100.0
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.1e-217 758.8 383 100.0
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.6e-204 716.1 410 89.8
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 1.3e-198 696.4 408 88.0
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.7e-198 696.0 408 86.5
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 2.1e-193 679.1 399 87.5
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 3.4e-191 671.8 408 83.3
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 3.3e-186 655.2 407 80.6
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 5.6e-186 654.4 406 82.5
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 6.8e-184 647.5 408 80.9
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 2.0e-183 646.0 406 78.8
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 2.0e-183 646.0 407 81.6
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 5.8e-183 644.4 406 78.8
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 8.3e-182 640.6 406 80.5
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 1.9e-181 639.4 406 81.3
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 5.8e-167 591.3 414 73.9
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 9.9e-167 590.5 414 73.2
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 6.4e-166 587.8 414 73.2
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 5.1e-163 578.2 414 70.5
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 7.3e-162 574.3 412 70.4
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 9.0e-160 567.4 414 68.6
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 1.7e-158 563.1 416 68.5
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.9e-158 562.4 419 68.7
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.4e-158 560.8 414 67.6
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.4e-157 560.1 414 67.4
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.6e-156 556.6 414 66.9
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 2.7e-156 555.8 414 67.4
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.7e-156 555.8 414 67.4
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 7.8e-156 554.3 412 68.7
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 3.9e-155 552.0 410 68.8
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 3.9e-155 552.0 412 67.7
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 7.3e-154 547.7 479 60.5
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 3.6e-153 545.4 413 69.0
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.1e-152 543.9 411 66.2
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 6.9e-152 541.2 408 65.9
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 6.9e-152 541.2 414 67.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.5e-151 538.5 408 65.9
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.3e-150 537.0 402 67.9
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 1.7e-150 536.6 413 65.1
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 4.9e-150 535.0 440 61.6
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 6.4e-150 534.6 412 66.7
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 6.4e-150 534.6 416 65.9
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.1e-149 533.9 408 65.4
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 1.4e-149 533.5 414 65.7
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 4.6e-148 528.5 414 64.7
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.8e-147 526.6 410 63.2
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 3.3e-146 522.3 412 65.0
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 7.4e-146 521.2 415 64.1
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 2.1e-145 519.6 394 66.8
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 3.7e-145 518.8 418 63.6
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 6.2e-145 518.1 348 78.2
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 4.5e-143 511.9 409 61.6
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 9.9e-143 510.8 411 64.0
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.3e-142 510.4 403 62.8
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 3.8e-142 508.8 386 66.1
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 4.9e-142 508.4 404 63.9
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.1e-141 507.3 413 64.4
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.1e-141 507.3 414 63.8
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 2.5e-141 506.1 412 61.7
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 3.2e-141 505.8 407 62.7
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 1.2e-140 503.8 387 65.9
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.6e-140 503.4 412 63.8
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.1e-140 503.1 409 61.1
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 6.0e-140 501.5 414 60.9
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 3.0e-139 499.2 418 62.2
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 4.3e-138 495.4 412 61.2
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 4.8e-137 491.9 409 61.1
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 1.1e-136 490.7 419 63.0
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 1.4e-133 480.3 420 57.1
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.2e-133 479.2 409 59.4
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 2.1e-132 476.5 416 61.3
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 6.0e-132 474.9 415 57.8
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 6.0e-132 474.9 395 59.2
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 2.3e-131 473.0 354 68.1
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.3e-129 467.2 419 57.0
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 4.1e-128 462.2 364 65.1
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 9.0e-128 461.1 346 68.2
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 2.2e-126 456.4 352 66.2
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 2.5e-125 453.0 387 58.7
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 3.2e-125 452.6 385 58.7
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 1.6e-124 450.3 415 57.3
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 5.1e-123 445.3 402 55.5
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.1e-122 444.1 399 55.9
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.1e-122 444.1 410 54.9
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 9.7e-122 441.0 348 63.8
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.1e-120 437.6 446 55.2
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 1.8e-120 436.8 388 58.5
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 3.1e-120 436.0 414 56.0
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 7.7e-119 431.4 359 58.8
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.3e-118 430.6 417 55.6
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 5.0e-118 428.7 417 55.4
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.5e-118 427.9 416 55.5
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 8.5e-118 427.9 416 55.8
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 8.5e-118 427.9 353 61.5
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 9.4e-117 424.5 418 55.0
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.8e-115 420.2 384 57.3
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 4.8e-113 412.1 391 54.2
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.4e-112 410.6 351 57.8
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 4.1e-112 409.1 418 53.8
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 4.1e-112 409.1 452 46.9
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 5.3e-112 408.7 437 49.0
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 5.3e-112 408.7 465 46.5
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 7.0e-112 408.3 418 53.8
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 3.5e-111 406.0 416 53.1
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.5e-109 399.8 299 67.2
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 6.3e-89 332.0 371 45.0
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.0e-86 324.7 430 40.2
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.7e-86 323.9 264 59.8
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 2.9e-86 323.2 471 38.4
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 9.8e-82 308.1 354 52.0
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 9.2e-80 301.6 222 65.3
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.0e-78 298.1 321 48.6
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 2.1e-76 290.4 231 68.4
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.8e-75 287.3 193 72.0
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 2.2e-73 280.4 194 71.1
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 2.3e-67 260.4 282 51.8
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 3.7e-65 253.1 187 64.7
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 3.3e-61 240.0 308 41.2
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 9.9e-58 228.4 159 71.7
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 2.3e-46 190.7 132 72.0
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 7.3e-45 185.7 405 32.3
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 2.1e-44 184.1 136 69.9
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.7e-39 167.2 146 58.9
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 8.7e-38 162.2 277 37.5
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.3e-36 158.3 116 68.1
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 4.8e-36 156.4 344 30.2
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.2e-36 156.0 153 53.6
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 9.0e-35 152.1 313 31.3
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 1.3e-33 148.3 166 50.6
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 3.9e-30 136.7 94 68.1
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 3.4e-26 123.6 598 24.2
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 3.9e-22 110.2 81 64.2
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 3.4e-18 97.1 117 45.3
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 5.7e-13 79.7 52 71.2
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 4.8e-12 76.6 95 47.4
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 5.3e-11 73.2 81 44.4
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 4.2e-08 63.5 334 23.4
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 9.4e-08 62.4 114 36.8
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 2.3e-06 57.8 31 80.6
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.9e-06 57.0 158 26.6


User provided reference genes

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