Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 2964.9 1494 100.0
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 2687.9 1496 90.3
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 2670.2 1496 90.2
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 2625.9 1496 89.1
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 2500.3 1502 84.0
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 2478.0 1502 83.3
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 2468.3 1500 83.0
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 2419.0 1500 81.1
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 2326.6 1503 78.6
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 2288.1 1524 77.1
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 2288.1 1524 77.1
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 2070.8 1503 73.1
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1896.3 1502 64.5
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1895.2 1553 67.0
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1823.5 1508 61.5
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1815.4 1499 62.7
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1776.1 1545 60.4
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1768.8 1508 60.1
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1750.7 1511 60.0
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1741.9 1521 60.7
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1739.2 1517 60.3
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1731.5 1504 59.0
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1721.1 1514 58.7
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1696.8 1503 58.2
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1694.9 1502 58.5
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1678.3 1531 57.3
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1676.0 1515 58.3
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1667.9 1494 59.5
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1665.2 1515 59.1
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1664.0 1460 59.0
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1664.0 1537 57.8
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1654.0 1514 57.4
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1645.6 1505 58.5
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1639.8 1517 56.9
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1617.8 1618 53.8
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1598.9 1496 56.9
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1587.0 1504 55.3
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1579.3 1500 56.7
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1577.0 1499 56.7
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1576.6 1507 54.4
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1567.7 1505 54.8
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1563.1 1507 54.1
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1553.5 1517 52.8
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1550.0 1505 55.1
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1546.9 1510 54.1
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1543.1 1437 57.2
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1537.3 1200 65.6
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1537.3 1520 52.4
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1529.6 1516 52.2
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1529.6 1503 53.8
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1524.2 1513 54.4
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1517.3 1513 53.1
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1495.3 1534 51.8
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1483.4 1505 53.8
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1481.5 1497 53.0
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1478.0 1497 52.3
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1473.4 1495 52.8
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1469.5 1500 53.1
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1459.9 1522 51.5
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1459.1 1286 58.8
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1441.8 1485 51.6
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1404.0 1525 49.2
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1401.3 1516 50.2
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1393.3 1506 51.0
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1386.7 1500 50.6
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1381.7 1515 50.0
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1379.8 1512 49.7
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1371.7 1235 58.5
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1371.3 1512 49.4
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1357.4 1515 49.6
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1357.0 1503 49.6
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1337.0 1498 47.9
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1334.3 1443 50.1
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1334.3 1513 48.6
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1333.5 1510 49.1
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1324.7 1540 47.9
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1321.2 1511 48.6
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1321.2 1511 48.4
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1317.8 1511 48.8
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1304.7 1543 47.4
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1285.0 1748 42.6
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1233.8 1543 45.2
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1226.8 1386 49.3
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1213.4 1162 56.1
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1206.8 1531 45.2
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1203.0 1121 57.3
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1187.2 1291 50.0
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1176.4 1133 56.0
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1176.0 1507 43.9
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1152.1 1124 55.0
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1140.9 1052 57.4
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 9.5e-300 1034.2 986 55.8
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.3e-280 970.7 568 84.3
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 5.1e-253 879.0 1127 44.6
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.7e-240 837.4 1143 42.3
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 4.9e-240 835.9 1540 35.5
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 4.8e-235 819.3 1533 35.0
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.2e-233 814.7 1530 35.9
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 1.1e-212 745.0 588 63.8
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 2.2e-211 740.7 573 65.3
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 6.3e-211 739.2 1034 43.6
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.7e-204 716.1 977 42.6
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.1e-191 675.2 642 55.8
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.6e-188 664.1 1397 33.5
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 9.8e-188 662.1 1020 41.1
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 2.3e-184 651.0 1030 40.8
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 6.6e-184 649.4 1031 40.4
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.4e-178 630.9 589 55.9
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.9e-175 621.3 600 55.2
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 4.0e-149 533.9 478 59.6
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.6e-142 510.8 572 50.2
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 6.0e-129 466.8 366 68.3
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.1e-127 462.6 562 45.7
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.5e-122 444.9 546 46.2
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.8e-120 438.7 1018 33.5
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 2.3e-104 385.2 526 43.5
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-103 380.2 1002 28.8
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.3e-95 354.8 543 38.9
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-87 329.7 491 41.8
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 2.7e-84 318.5 407 47.7
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 1.2e-81 309.7 184 82.6
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 2.4e-77 295.4 304 55.9
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 3.1e-77 295.0 452 40.5
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-76 293.1 451 42.8
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 2.0e-76 292.4 275 54.5
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.3e-75 289.7 195 74.4
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 2.3e-75 288.9 305 48.2
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.9e-74 285.8 319 47.6
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 7.2e-74 283.9 333 44.1
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 3.7e-70 271.6 464 35.6
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 6.3e-70 270.8 212 63.7
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 6.8e-64 250.8 210 60.0
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 6.0e-60 237.7 841 26.9
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.8e-60 237.3 365 39.5
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 4.3e-58 231.5 386 38.9
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-57 229.9 291 43.3
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.8e-57 228.8 243 52.3
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-56 226.9 228 55.3
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 2.0e-55 222.6 125 83.2
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 3.4e-55 221.9 150 75.3
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.9e-53 216.1 294 43.5
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.1e-52 212.6 193 53.4
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 3.0e-51 208.8 281 42.0
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 6.6e-43 181.0 134 63.4
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 6.2e-41 174.5 196 52.0
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-40 173.7 126 67.5
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 6.8e-40 171.0 385 33.2
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-37 163.3 191 49.2
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 9.2e-37 160.6 193 47.2
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 5.3e-32 144.8 117 56.4
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-31 143.7 119 57.1
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 2.9e-30 139.0 116 60.3
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-20 104.4 256 28.1
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 4.8e-17 95.1 111 43.2
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 3.1e-16 92.4 672 21.3
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 5.8e-15 88.2 100 48.0
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 2.9e-14 85.9 100 47.0
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 6.2e-09 68.2 61 52.5
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 1.4e-08 67.0 177 31.6
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 3.1e-08 65.9 42 73.8
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 1.2e-07 63.9 47 63.8
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.7e-06 60.1 95 40.0
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 6.5e-06 58.2 60 50.0


User provided reference genes

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