Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 1.8e-57 225.7 114 100.0
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 4.7e-42 174.5 114 77.2
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 5.8e-40 167.5 114 80.7
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 7.5e-40 167.2 112 75.9
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 4.4e-32 141.4 114 68.4
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 4.9e-31 137.9 114 67.5
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 2.4e-30 135.6 116 64.7
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 4.7e-26 121.3 114 61.4
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 5.8e-24 114.4 112 59.8
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 1.1e-17 93.6 110 53.6
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 9.0e-17 90.5 109 53.2
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 4.5e-16 88.2 78 65.4
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 8.4e-15 84.0 120 44.2
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.4e-14 83.2 68 63.2
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 1.9e-14 82.8 99 52.5
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.9e-14 82.8 121 47.1
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 2.4e-14 82.4 113 46.0
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 5.4e-14 81.3 112 46.4
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 7.1e-14 80.9 108 49.1
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 9.3e-14 80.5 75 60.0
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 9.3e-14 80.5 121 46.3
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 9.3e-14 80.5 67 62.7
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.2e-13 80.1 88 52.3
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 1.2e-13 80.1 73 58.9
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.1e-13 79.3 84 59.5
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 3.5e-13 78.6 71 62.0
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 6.0e-13 77.8 81 54.3
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 7.9e-13 77.4 68 61.8
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.3e-12 76.6 74 63.5
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 1.8e-12 76.3 68 58.8
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.3e-12 75.9 68 58.8
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 3.0e-12 75.5 63 69.8
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 3.0e-12 75.5 70 58.6
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 5.1e-12 74.7 72 58.3
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 8.7e-12 73.9 121 40.5
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.1e-11 73.6 117 45.3
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.1e-11 73.6 117 45.3
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 1.5e-11 73.2 76 56.6
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 1.5e-11 73.2 119 42.9
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 1.9e-11 72.8 62 62.9
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.9e-11 72.8 117 41.0
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 2.5e-11 72.4 118 44.1
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 5.6e-11 71.2 114 43.0
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 5.6e-11 71.2 108 46.3
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 5.6e-11 71.2 74 58.1
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 7.4e-11 70.9 88 45.5
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 9.6e-11 70.5 61 62.3
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 1.3e-10 70.1 68 58.8
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 1.3e-10 70.1 62 62.9
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 1.6e-10 69.7 65 64.6
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 2.1e-10 69.3 66 57.6
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 2.8e-10 68.9 64 64.1
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 6.2e-10 67.8 94 45.7
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 6.2e-10 67.8 94 45.7
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 8.1e-10 67.4 69 59.4
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 8.1e-10 67.4 72 58.3
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 8.1e-10 67.4 72 58.3
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 1.4e-09 66.6 67 53.7
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 3.1e-09 65.5 70 51.4
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 3.1e-09 65.5 68 54.4
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 4.0e-09 65.1 72 56.9
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 5.3e-09 64.7 68 54.4
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 9.0e-09 63.9 114 42.1
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 1.2e-08 63.5 73 56.2
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 1.2e-08 63.5 68 52.9
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.0e-08 62.8 74 55.4
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 2.0e-08 62.8 62 58.1
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 3.4e-08 62.0 56 58.9
Lalb_Chr02g0144981 Lupinus albus HOM05D007107 ORTHO05D009198 4.5e-08 61.6 89 46.1
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 4.5e-08 61.6 91 47.3
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 4.5e-08 61.6 57 59.6
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 5.8e-08 61.2 73 49.3
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 7.6e-08 60.8 71 50.7
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 2.9e-07 58.9 79 48.1
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 2.9e-07 58.9 65 55.4
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 3.8e-07 58.5 67 52.2
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 4.9e-07 58.2 64 54.7
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 6.4e-07 57.8 62 54.8
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 6.4e-07 57.8 57 56.1
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 8.4e-07 57.4 100 38.0
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 8.4e-07 57.4 63 55.6
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 1.9e-06 56.2 65 55.4
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 1.9e-06 56.2 79 46.8
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 1.9e-06 56.2 79 46.8
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 4.2e-06 55.1 64 54.7
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 4.2e-06 55.1 103 38.8
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 9.3e-06 53.9 64 51.6


User provided reference genes

Program Settings