Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 2.5e-62 241.9 119 100.0
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 2.2e-18 95.9 48 93.8
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 2.2e-18 95.9 70 72.9
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 2.2e-18 95.9 48 93.8
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 5.0e-18 94.7 46 97.8
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 8.5e-18 94.0 84 60.7
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 1.1e-17 93.6 48 93.8
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 1.1e-17 93.6 48 93.8
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 1.9e-17 92.8 45 97.8
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 2.5e-17 92.4 45 95.6
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 2.5e-17 92.4 46 95.7
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 3.2e-17 92.0 48 87.5
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 3.2e-17 92.0 47 91.5
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 3.2e-17 92.0 48 89.6
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 4.2e-17 91.7 48 89.6
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 4.2e-17 91.7 45 95.6
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 5.5e-17 91.3 48 87.5
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 5.5e-17 91.3 48 87.5
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 5.5e-17 91.3 44 97.7
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 5.5e-17 91.3 44 97.7
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 5.5e-17 91.3 44 97.7
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 5.5e-17 91.3 44 97.7
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 7.2e-17 90.9 47 89.4
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 7.2e-17 90.9 44 95.5
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 9.4e-17 90.5 45 95.6
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 9.4e-17 90.5 48 91.7
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 1.2e-16 90.1 45 91.1
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 1.2e-16 90.1 44 95.5
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 1.6e-16 89.7 44 95.5
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 1.6e-16 89.7 47 89.4
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 2.1e-16 89.4 48 85.4
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 2.1e-16 89.4 43 97.7
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 2.1e-16 89.4 47 89.4
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 2.7e-16 89.0 44 95.5
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 2.7e-16 89.0 44 95.5
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 2.7e-16 89.0 44 95.5
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 3.6e-16 88.6 45 88.9
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 6.1e-16 87.8 44 93.2
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 6.1e-16 87.8 43 95.3
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 6.1e-16 87.8 47 87.2
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 7.9e-16 87.4 44 93.2
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 7.9e-16 87.4 44 93.2
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 7.9e-16 87.4 44 93.2
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 7.9e-16 87.4 47 87.2
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 7.9e-16 87.4 41 100.0
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 7.9e-16 87.4 44 93.2
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 7.9e-16 87.4 44 93.2
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 7.9e-16 87.4 44 93.2
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.0e-15 87.0 44 93.2
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.0e-15 87.0 44 93.2
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.0e-15 87.0 44 93.2
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 1.0e-15 87.0 44 88.6
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 1.4e-15 86.7 47 85.1
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 1.4e-15 86.7 47 85.1
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 1.4e-15 86.7 48 85.4
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 1.4e-15 86.7 44 93.2
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 2.3e-15 85.9 45 86.7
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 2.3e-15 85.9 41 97.6
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 3.0e-15 85.5 46 87.0
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 3.0e-15 85.5 44 90.9
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 3.9e-15 85.1 45 86.7
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 3.9e-15 85.1 44 88.6
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 8.8e-15 84.0 44 93.2
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 8.8e-15 84.0 43 88.4
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 8.8e-15 84.0 44 88.6
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 1.1e-14 83.6 47 85.1
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 1.1e-14 83.6 44 90.9
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 1.5e-14 83.2 44 86.4
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 2.5e-14 82.4 44 86.4
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 2.5e-14 82.4 44 86.4
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 2.5e-14 82.4 44 88.6
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 4.3e-14 81.6 44 88.6
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 9.7e-14 80.5 44 88.6
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 1.1e-12 77.0 48 70.8
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 1.1e-12 77.0 48 70.8
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.8e-12 76.3 44 81.8
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 2.4e-12 75.9 36 100.0
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 2.4e-12 75.9 36 100.0
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.2e-11 73.6 41 85.4
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.2e-11 73.6 44 79.5
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 2.6e-11 72.4 48 75.0
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 3.4e-11 72.0 41 82.9
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 3.4e-11 72.0 44 72.7
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 4.5e-11 71.6 50 68.0
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 7.7e-11 70.9 36 91.7
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 2.9e-10 68.9 39 89.7
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 1.4e-09 66.6 45 73.3
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.6e-08 63.2 43 67.4
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.7e-08 62.4 33 84.8
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 2.7e-08 62.4 33 84.8
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 1.0e-07 60.5 28 92.9
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 6.7e-07 57.8 28 96.4


User provided reference genes

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