Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 5.3e-250 867.5 514 100.0
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.2e-240 835.5 514 96.7
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.4e-239 832.8 514 96.1
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.1e-238 828.9 514 91.2
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 2.3e-237 825.5 513 95.9
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 3.7e-235 818.1 514 94.7
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 1.8e-234 815.8 514 95.3
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 9.0e-234 813.5 513 94.0
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 2.6e-233 812.0 514 94.2
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.6e-233 812.0 514 92.8
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 3.4e-233 811.6 514 94.0
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 3.4e-233 811.6 514 92.4
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 1.0e-232 810.1 512 94.3
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 2.9e-232 808.5 514 88.9
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.8e-232 808.1 514 93.0
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 3.8e-232 808.1 514 93.2
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 6.5e-232 807.4 514 91.4
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 8.5e-232 807.0 514 91.8
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.4e-231 806.2 514 93.0
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.9e-231 805.8 513 92.4
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 2.5e-231 805.4 514 94.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 7.2e-231 803.9 513 92.2
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 1.2e-230 803.1 514 92.6
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 2.1e-230 802.4 513 92.0
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 3.6e-230 801.6 514 92.6
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 4.6e-230 801.2 513 91.8
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 4.6e-230 801.2 509 88.4
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 6.1e-230 800.8 512 92.0
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.0e-229 800.0 514 92.2
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.3e-229 798.9 514 92.4
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 6.7e-229 797.3 513 92.8
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 8.8e-229 797.0 510 89.8
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 8.8e-229 797.0 510 89.2
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.1e-228 796.6 511 91.8
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.5e-228 796.2 536 89.4
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 2.0e-228 795.8 514 91.1
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 2.0e-228 795.8 510 92.5
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 2.5e-228 795.4 511 91.8
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 5.7e-228 794.3 510 88.6
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 5.7e-228 794.3 511 88.3
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 9.7e-228 793.5 512 92.6
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 3.7e-227 791.6 514 91.6
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 3.7e-227 791.6 514 91.6
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 4.8e-227 791.2 513 91.6
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 4.8e-227 791.2 504 91.7
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.1e-226 790.0 514 85.6
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.1e-226 790.0 510 92.2
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.4e-226 789.6 504 93.1
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 1.8e-226 789.3 527 81.6
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 2.4e-226 788.9 512 91.6
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 2.4e-226 788.9 514 87.2
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 5.3e-226 787.7 513 92.2
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 5.3e-226 787.7 514 90.5
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 2.0e-225 785.8 514 90.3
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 2.0e-225 785.8 512 91.4
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 2.6e-225 785.4 504 92.3
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.0e-224 783.5 514 89.3
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 1.7e-224 782.7 511 89.4
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 2.2e-224 782.3 511 92.0
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 2.9e-224 781.9 514 91.4
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 3.8e-224 781.6 504 92.1
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.1e-223 780.0 514 88.7
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 2.5e-223 778.9 514 90.7
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 3.2e-223 778.5 514 90.5
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 4.2e-223 778.1 514 91.1
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 5.5e-223 777.7 513 88.9
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 9.4e-223 776.9 511 90.6
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 3.6e-222 775.0 515 89.3
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 4.7e-222 774.6 535 84.3
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 3.0e-221 771.9 513 85.2
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 9.7e-220 766.9 511 84.5
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.3e-219 766.5 511 83.6
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 8.2e-219 763.8 512 90.2
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.8e-218 762.7 514 89.7
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 5.3e-218 761.1 514 84.2
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 4.5e-217 758.1 507 89.2
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 1.3e-216 756.5 511 85.9
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 1.7e-216 756.1 514 89.1
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 2.2e-216 755.7 511 83.2
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 2.9e-216 755.4 514 80.0
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 2.5e-215 752.3 514 83.1
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.5e-215 752.3 514 83.1
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.1e-214 749.2 509 90.2
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 8.0e-214 747.3 500 87.0
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 8.0e-214 747.3 485 92.2
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.8e-213 746.1 511 85.5
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.5e-212 743.0 509 85.5
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.5e-212 743.0 509 85.5
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 3.3e-212 741.9 511 85.1
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 1.3e-211 740.0 514 85.0
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.8e-211 738.8 542 79.0
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.7e-208 729.6 514 81.9
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.1e-206 722.6 514 76.8
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 5.2e-205 718.0 511 85.3
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 1.2e-204 716.8 520 82.5
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 1.5e-204 716.5 557 77.9
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 1.3e-203 713.4 535 80.6
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.2e-203 712.6 514 80.4
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 6.3e-203 711.1 551 72.8
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.6e-201 706.4 484 88.6
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.0e-201 706.1 464 94.4
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 4.5e-201 704.9 514 81.5
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 8.0e-198 694.1 525 82.5
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 6.8e-197 691.0 468 90.4
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 5.7e-196 688.0 514 80.0
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.5e-193 678.7 513 84.2
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 5.0e-192 674.9 511 73.4
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.0e-189 667.2 435 91.0
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 2.5e-183 646.0 430 92.6
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 7.3e-183 644.4 428 91.4
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 3.5e-161 572.4 518 67.6
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 5.1e-160 568.5 414 86.5
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 1.2e-153 547.4 511 66.9
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 6.6e-144 515.0 272 93.0
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 7.6e-132 474.9 254 93.3
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.7e-131 473.8 322 88.5
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 3.8e-123 446.0 312 80.8
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 1.8e-117 427.2 388 61.9
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 5.0e-107 392.5 210 95.2
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 1.1e-106 391.3 210 94.8
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.7e-94 350.9 365 74.8
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.4e-85 320.5 257 84.8
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.0e-75 288.5 523 49.3
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 9.2e-69 265.4 176 84.7
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 8.9e-64 248.8 134 95.5
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 6.4e-62 242.7 526 34.8
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 1.4e-45 188.3 99 86.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.1e-44 184.5 149 61.7
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 1.1e-42 178.7 318 45.3
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 7.1e-37 159.5 80 92.5
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 6.6e-35 152.9 80 95.0
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 1.3e-33 148.7 241 44.8
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 2.4e-32 144.4 137 62.0
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 9.0e-32 142.5 107 72.0
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.5e-31 141.7 293 31.4
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 8.7e-27 125.9 70 85.7
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 6.2e-25 119.8 69 82.6
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 5.3e-24 116.7 64 82.8
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 5.3e-24 116.7 64 82.8
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 7.1e-21 106.3 56 83.9
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 2.7e-20 104.4 52 86.5
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 3.9e-19 100.5 74 66.2
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 3.9e-19 100.5 74 66.2
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 6.7e-19 99.8 56 75.0
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.6e-17 95.1 128 44.5
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 2.1e-17 94.7 46 91.3
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.8e-17 93.6 47 100.0
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 4.0e-16 90.5 46 87.0
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 4.5e-15 87.0 134 76.1
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 2.7e-12 77.8 105 43.8
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 1.3e-11 75.5 36 88.9
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 1.4e-08 65.5 62 58.1
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 5.9e-07 60.1 29 86.2
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 7.6e-07 59.7 35 74.3
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 2.2e-06 58.2 74 52.7
Lsat_1_v5_gn_3_52840 Lactuca sativa HOM05D004842 ORTHO05D005929 5.0e-06 57.0 35 71.4


User provided reference genes

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