Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.0e-134 483.4 242 100.0
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.5e-82 310.1 196 81.6
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 9.9e-82 307.4 175 86.9
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 4.9e-81 305.1 175 87.4
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 2.8e-76 289.3 175 82.9
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 2.4e-75 286.2 175 83.4
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.2e-74 283.9 175 82.3
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 4.5e-74 282.0 196 75.0
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.7e-73 280.0 175 80.0
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 2.9e-73 279.3 188 77.1
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.1e-72 277.3 201 72.1
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 1.4e-72 276.9 198 74.7
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 4.2e-72 275.4 175 78.9
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.2e-72 275.4 201 71.1
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 1.2e-71 273.9 202 70.8
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.2e-71 273.9 203 70.9
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.6e-71 273.5 199 73.4
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 3.5e-71 272.3 176 78.4
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 6.0e-71 271.6 200 71.0
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.0e-70 270.8 201 71.1
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.0e-70 270.8 202 70.3
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.0e-70 270.8 203 70.4
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.0e-70 270.8 203 70.4
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.8e-70 270.0 176 79.5
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.8e-70 270.0 181 79.0
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 3.0e-70 269.2 175 78.3
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 3.0e-70 269.2 176 77.8
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 3.9e-70 268.9 196 71.9
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 5.1e-70 268.5 176 78.4
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 8.7e-70 267.7 200 71.0
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 8.7e-70 267.7 176 77.3
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 8.7e-70 267.7 179 76.0
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.1e-69 267.3 175 77.1
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 1.1e-69 267.3 175 77.1
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.1e-69 267.3 176 77.8
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.5e-69 266.9 191 73.8
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 2.5e-69 266.2 201 71.6
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 2.5e-69 266.2 192 72.9
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 2.5e-69 266.2 198 70.2
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 3.3e-69 265.8 176 77.3
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 3.3e-69 265.8 176 77.8
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 4.3e-69 265.4 174 77.0
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 5.6e-69 265.0 200 71.5
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.6e-69 265.0 176 76.1
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 7.4e-69 264.6 201 70.6
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 7.4e-69 264.6 176 79.5
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 7.4e-69 264.6 176 76.1
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 7.4e-69 264.6 201 70.6
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 9.6e-69 264.2 201 69.2
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.3e-68 263.8 176 76.7
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.3e-68 263.8 192 71.4
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.3e-68 263.8 174 77.0
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 1.6e-68 263.5 201 68.2
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 2.1e-68 263.1 181 76.2
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 3.7e-68 262.3 199 70.9
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 3.7e-68 262.3 201 68.2
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 4.8e-68 261.9 200 68.0
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 4.8e-68 261.9 200 68.0
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 4.8e-68 261.9 200 69.0
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 8.1e-68 261.2 199 68.8
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 8.1e-68 261.2 203 69.0
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.1e-67 260.8 200 68.5
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 1.4e-67 260.4 161 83.9
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 3.1e-67 259.2 174 75.9
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 6.9e-67 258.1 199 68.8
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 9.0e-67 257.7 176 75.6
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.2e-66 257.3 178 76.4
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.5e-66 256.9 176 73.3
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.5e-66 256.9 176 75.6
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 2.0e-66 256.5 202 67.8
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 2.6e-66 256.1 185 71.9
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 3.4e-66 255.8 175 74.3
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 3.4e-66 255.8 199 68.3
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 3.4e-66 255.8 172 75.6
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 4.5e-66 255.4 174 75.9
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 4.5e-66 255.4 196 68.9
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.0e-65 254.2 176 72.7
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.3e-65 253.8 174 75.3
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.9e-65 252.7 176 73.9
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.9e-65 252.7 176 73.9
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 2.9e-65 252.7 178 74.7
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 2.9e-65 252.7 178 74.7
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.1e-64 250.8 178 74.7
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.9e-64 250.0 198 67.7
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.9e-64 250.0 176 73.3
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.9e-64 250.0 177 72.3
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 2.5e-64 249.6 214 63.6
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 2.5e-64 249.6 176 72.7
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.2e-64 249.2 199 67.3
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.2e-64 249.2 176 73.3
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 5.5e-64 248.4 216 62.5
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 5.5e-64 248.4 200 68.0
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 7.1e-64 248.1 175 73.1
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.3e-64 247.7 176 72.2
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.2e-63 247.3 187 69.5
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 3.5e-63 245.7 179 69.8
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.5e-63 245.7 176 71.6
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.5e-63 245.7 176 71.6
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 1.0e-62 244.2 178 71.3
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.3e-62 243.8 178 73.0
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.8e-62 243.4 176 71.0
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 3.0e-62 242.7 200 66.0
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 3.0e-62 242.7 160 76.2
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 5.1e-62 241.9 175 70.9
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 6.7e-62 241.5 173 74.0
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 1.1e-61 240.7 177 70.1
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 1.5e-61 240.4 198 63.6
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.9e-61 240.0 198 66.2
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.3e-60 237.3 183 68.9
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.6e-60 236.9 177 68.9
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 2.1e-60 236.5 176 68.8
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 4.8e-60 235.3 176 68.8
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 6.2e-60 235.0 169 71.0
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 6.2e-60 235.0 196 64.3
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 8.2e-60 234.6 234 55.6
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 8.2e-60 234.6 234 55.6
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 2.4e-59 233.0 194 66.5
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 3.1e-59 232.6 194 66.5
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 5.3e-59 231.9 253 54.2
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 1.2e-58 230.7 191 67.0
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 1.5e-58 230.3 174 69.5
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 3.4e-58 229.2 175 66.9
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 5.8e-58 228.4 174 70.1
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 3.2e-56 222.6 166 69.9
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 9.3e-56 221.1 141 80.9
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 2.7e-55 219.5 167 67.7
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 4.6e-55 218.8 131 83.2
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 1.9e-53 213.4 174 62.6
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 2.5e-53 213.0 182 64.8
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.3e-53 212.6 176 64.8
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 1.6e-52 210.3 266 49.6
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.2e-52 209.9 159 70.4
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 2.2e-52 209.9 244 51.6
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 8.2e-52 208.0 135 76.3
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 1.8e-51 206.8 163 66.9
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 3.1e-51 206.1 139 79.1
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 4.1e-51 205.7 136 74.3
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 1.5e-50 203.8 161 66.5
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 1.5e-50 203.8 135 76.3
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 2.6e-50 203.0 182 61.0
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 3.4e-50 202.6 162 66.7
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 3.4e-50 202.6 136 74.3
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 3.4e-50 202.6 160 67.5
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 1.0e-49 201.1 176 64.2
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.2e-48 194.9 136 73.5
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 1.2e-47 194.1 178 59.0
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 3.0e-46 189.5 155 65.8
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 6.7e-46 188.3 178 56.7
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.1e-45 187.6 138 70.3
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 4.3e-45 185.7 176 56.8
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.7e-44 183.7 175 60.6
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.1e-43 181.0 182 57.1
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 2.4e-43 179.9 153 64.1
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.5e-42 177.2 135 69.6
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 2.6e-42 176.4 152 64.5
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 3.2e-40 169.5 148 59.5
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.7e-39 165.6 127 66.9
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 2.0e-37 160.2 188 52.7
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.7e-37 158.7 175 52.0
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 6.3e-36 155.2 139 59.0
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 2.6e-34 149.8 171 52.0
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 3.2e-32 142.9 175 48.6
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 7.0e-27 125.2 88 70.5
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.5e-26 122.9 92 70.7
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 2.2e-25 120.2 72 81.9
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 3.8e-25 119.4 82 75.6
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 4.4e-21 105.9 65 78.5
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 9.8e-21 104.8 70 75.7
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.3e-20 104.4 66 78.8
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 2.2e-20 103.6 151 43.7
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.8e-20 102.4 68 73.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.0e-17 94.7 164 40.9
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.7e-13 79.0 138 39.1
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.1e-11 74.7 66 60.6
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.0e-10 70.5 69 55.1
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 4.3e-08 62.8 34 82.4


User provided reference genes

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