Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.5e-231 805.8 409 100.0
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 2.0e-199 699.1 407 86.2
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.9e-178 629.4 407 76.9
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.8e-177 625.5 407 76.4
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.4e-175 618.6 407 76.2
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.4e-173 612.5 408 76.7
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.5e-172 608.6 408 76.0
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 5.4e-165 584.7 407 71.7
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.3e-161 573.5 407 70.5
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 7.6e-159 564.3 340 84.7
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 6.4e-158 561.2 387 71.6
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.6e-156 556.6 347 79.0
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 3.5e-156 555.4 352 77.0
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 6.0e-156 554.7 359 74.4
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.3e-155 553.5 354 76.3
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 3.9e-155 552.0 373 73.7
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.1e-154 550.4 413 65.9
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.3e-154 548.9 387 70.3
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.8e-153 545.8 417 68.1
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 5.3e-152 541.6 346 76.3
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 5.3e-152 541.6 350 73.7
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.2e-151 540.4 351 75.5
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 5.8e-151 538.1 409 67.2
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.9e-150 535.8 402 66.9
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.5e-149 532.7 356 73.9
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 7.1e-149 531.2 346 73.7
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.7e-148 529.3 357 74.2
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 2.7e-148 529.3 354 72.0
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 4.6e-148 528.5 402 67.2
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 4.6e-148 528.5 402 67.2
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 7.9e-148 527.7 353 73.9
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 7.9e-148 527.7 429 65.7
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.3e-147 526.9 337 75.7
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 3.9e-147 525.4 352 73.0
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 5.1e-147 525.0 352 72.4
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 5.1e-147 525.0 385 68.3
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 6.7e-147 524.6 352 72.7
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.9e-146 523.1 384 68.0
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.3e-145 520.4 403 64.0
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 2.8e-145 519.2 411 64.7
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.7e-145 518.8 352 71.9
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.4e-144 516.9 413 63.9
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.8e-144 516.5 382 65.7
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 2.4e-144 516.2 382 65.7
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 6.9e-144 514.6 356 70.2
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.0e-143 513.1 349 71.9
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 2.6e-143 512.7 344 70.6
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 3.4e-143 512.3 389 65.0
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 3.4e-143 512.3 362 70.4
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.4e-143 512.3 386 66.3
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.5e-143 511.9 334 74.6
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 4.5e-143 511.9 344 70.1
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 5.8e-143 511.5 363 71.3
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 5.8e-143 511.5 344 70.6
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 7.6e-143 511.1 412 63.8
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.3e-142 510.4 345 72.5
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.7e-142 510.0 353 71.7
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.7e-142 510.0 361 70.6
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.2e-142 509.6 347 71.2
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 4.9e-142 508.4 344 69.5
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.1e-141 507.3 375 67.7
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.4e-141 506.9 355 71.5
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.9e-141 506.5 393 65.9
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 3.2e-141 505.8 415 61.9
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 7.1e-141 504.6 393 65.6
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 7.1e-141 504.6 360 67.2
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 9.3e-141 504.2 380 65.5
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.2e-140 503.8 361 67.6
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 1.6e-140 503.4 393 65.4
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.1e-140 503.1 341 71.6
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 3.5e-140 502.3 393 65.1
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 3.5e-140 502.3 393 65.1
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 6.1e-140 501.5 368 66.8
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.8e-139 500.0 345 69.3
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 3.0e-139 499.2 318 76.1
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 3.9e-139 498.8 338 71.9
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.9e-139 498.8 344 69.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 8.7e-139 497.7 342 70.2
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 8.7e-139 497.7 365 68.5
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 8.7e-139 497.7 318 75.8
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 8.7e-139 497.7 318 75.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 4.8e-137 491.9 360 65.6
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.3e-136 488.4 344 66.6
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.5e-135 486.9 328 73.8
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.4e-135 485.7 408 64.5
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.3e-134 483.8 346 69.1
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.7e-134 483.4 366 67.8
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.9e-134 482.6 335 69.3
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 2.9e-134 482.6 345 68.1
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 8.5e-134 481.1 344 65.4
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.1e-133 480.7 305 75.4
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 5.5e-133 478.4 348 67.8
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.2e-132 477.2 400 62.5
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.0e-131 474.2 322 70.2
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 3.0e-131 472.6 458 54.1
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.0e-130 469.9 370 63.5
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 7.4e-130 468.0 344 63.7
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 3.4e-127 459.1 368 64.7
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 7.2e-125 451.4 292 76.4
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.2e-124 450.7 370 63.0
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 2.2e-121 439.9 344 60.2
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 1.8e-120 436.8 383 60.3
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 7.0e-120 434.9 362 64.9
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 3.8e-118 429.1 324 63.9
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.2e-116 424.1 350 59.7
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 2.1e-116 423.3 268 75.4
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 8.0e-116 421.4 562 44.8
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 5.2e-115 418.7 278 73.4
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 6.7e-115 418.3 316 63.3
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 3.2e-109 399.4 263 73.0
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.3e-102 377.5 298 63.4
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.5e-101 373.2 346 53.2
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 8.3e-97 358.2 349 53.6
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.8e-96 357.1 316 54.1
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 1.2e-95 354.4 231 75.8
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.0e-94 351.3 316 55.7
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 8.6e-94 348.2 335 51.3
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.7e-92 342.4 317 53.3
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.2e-87 327.8 262 61.1
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 5.6e-85 318.9 220 65.0
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 6.8e-83 312.0 216 69.0
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 6.6e-78 295.4 241 61.4
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.5e-77 294.3 207 71.5
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.3e-77 293.1 267 55.4
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 8.9e-75 285.0 203 69.5
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 7.1e-72 275.4 187 73.8
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.6e-71 274.2 171 74.3
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.7e-62 244.2 244 51.6
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 8.4e-57 225.3 224 55.8
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 5.1e-54 216.1 229 55.0
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.4e-48 198.0 119 74.8
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 9.0e-43 178.7 301 36.2
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-37 161.8 149 51.0
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 5.6e-37 159.5 341 30.8
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 2.6e-34 150.6 296 33.4
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 7.6e-34 149.1 93 73.1
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.1e-31 141.0 84 82.1
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 4.3e-21 106.7 98 46.9
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.8e-19 101.3 78 70.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 7.7e-18 95.9 89 50.6
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.8e-14 84.7 48 79.2
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 3.1e-11 73.9 184 26.1
Os08g0411000 Oryza sativa ssp. japonica HOM05D000911 ORTHO05D295734 8.8e-06 55.8 54 55.6


User provided reference genes

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