Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 8.5e-216 753.4 394 100.0
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 2.8e-134 482.6 407 70.5
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.2e-121 440.7 403 67.2
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 2.1e-121 439.9 406 65.8
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.6e-116 422.9 419 61.6
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.2e-115 419.9 420 61.2
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.8e-115 419.1 414 61.8
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.0e-115 418.7 418 60.8
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.3e-110 404.1 422 60.0
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.0e-104 384.4 417 59.0
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.0e-104 384.4 417 59.0
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.4e-104 384.0 418 58.1
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.2e-102 376.7 406 62.3
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 1.2e-97 360.9 410 56.3
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 7.5e-95 351.7 399 57.1
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.8e-94 349.0 390 56.7
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.8e-94 349.0 390 56.7
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.4e-93 346.7 390 56.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.2e-92 344.4 388 61.1
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.1e-89 333.6 412 53.6
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.6e-87 326.6 415 52.5
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.2e-86 323.6 402 56.7
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 4.1e-85 319.3 433 50.8
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.6e-84 317.4 408 51.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.3e-83 314.3 407 52.8
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.7e-83 313.9 407 52.8
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.2e-82 309.3 402 54.5
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 7.2e-82 308.5 401 50.6
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.3e-78 297.7 418 50.2
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.8e-77 293.9 405 52.6
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 3.1e-77 293.1 420 49.0
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-76 290.8 401 50.4
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.6e-76 290.8 401 50.4
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 7.8e-76 288.5 404 52.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 2.9e-75 286.6 416 53.1
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 2.9e-75 286.6 401 51.6
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 4.3e-74 282.7 437 46.7
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 7.3e-74 282.0 396 51.3
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 7.3e-74 282.0 392 55.1
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.8e-72 277.3 413 53.5
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 2.6e-71 273.5 400 53.5
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 2.6e-71 273.5 392 49.2
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.2e-70 270.4 404 48.0
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.9e-70 270.0 410 47.3
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.1e-69 268.1 383 48.8
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.8e-68 261.9 401 48.1
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 7.8e-68 261.9 383 48.6
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 8.6e-67 258.5 421 46.6
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 7.3e-66 255.4 387 45.7
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.1e-65 253.8 415 50.1
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.7e-65 252.7 423 49.4
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 4.7e-65 252.7 428 47.2
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 6.2e-65 252.3 408 49.3
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 5.2e-64 249.2 422 48.8
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 8.9e-64 248.4 422 48.3
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.2e-63 248.1 394 44.9
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.2e-63 248.1 423 49.2
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 2.9e-62 243.4 428 44.4
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 3.7e-62 243.0 345 49.0
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.6e-60 237.7 402 47.5
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.7e-60 236.9 382 45.5
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.9e-59 233.0 391 43.5
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 6.6e-59 232.3 436 44.0
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.9e-58 230.7 390 42.1
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 4.3e-58 229.6 382 44.8
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 5.6e-58 229.2 380 46.6
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 5.6e-58 229.2 396 40.9
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 3.1e-56 223.4 430 45.1
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 6.8e-56 222.2 392 47.7
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 7.5e-55 218.8 399 41.6
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 5.4e-53 212.6 426 41.5
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 2.1e-52 210.7 398 40.2
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 7.8e-52 208.8 246 55.7
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.3e-50 203.4 476 40.5
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 2.1e-49 200.7 434 42.4
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 3.6e-49 199.9 421 39.9
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 8.1e-49 198.7 477 35.8
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.4e-48 198.0 384 39.3
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.8e-48 197.6 385 41.6
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 8.9e-48 195.3 402 38.8
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-47 194.5 420 42.6
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 2.0e-47 194.1 240 54.2
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.7e-46 191.0 479 39.5
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 2.2e-46 190.7 385 41.3
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 5.4e-45 186.0 403 39.5
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 7.1e-45 185.7 386 37.0
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 7.1e-45 185.7 386 37.0
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 2.7e-44 183.7 473 36.2
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 4.6e-44 183.0 388 39.2
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 2.3e-43 180.6 302 44.4
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 2.3e-43 180.6 401 38.2
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 6.6e-43 179.1 398 37.2
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 1.9e-42 177.6 453 39.1
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 2.5e-42 177.2 432 38.4
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 3.3e-42 176.8 443 39.3
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 4.3e-42 176.4 414 37.7
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 4.3e-42 176.4 386 38.9
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 1.2e-41 174.9 453 38.2
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.6e-41 174.5 386 37.8
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 6.2e-41 172.6 397 38.0
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 6.2e-41 172.6 453 38.2
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.1e-40 171.8 446 38.1
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.4e-40 171.4 386 38.1
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 2.4e-40 170.6 417 40.3
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.4e-40 170.6 397 36.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 6.9e-40 169.1 397 36.3
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 2.6e-39 167.2 305 37.7
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 3.4e-39 166.8 244 44.3
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 5.8e-39 166.0 434 37.6
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.7e-38 164.5 359 37.3
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 3.2e-37 160.2 432 37.3
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 9.3e-37 158.7 412 35.7
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 9.3e-37 158.7 469 35.4
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.2e-36 158.3 396 38.1
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-36 157.9 432 37.0
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.0e-35 155.2 395 37.5
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 3.9e-35 153.3 396 36.6
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 3.9e-35 153.3 396 36.6
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 2.8e-33 147.1 391 34.3
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 2.8e-33 147.1 391 34.3
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.4e-32 144.8 470 32.6
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 2.6e-31 140.6 397 34.5
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.5e-31 139.8 402 34.1
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 5.8e-31 139.4 356 39.3
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.7e-30 137.9 235 43.8
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 4.9e-30 136.3 339 35.7
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.1e-29 135.2 427 34.0
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 2.4e-29 134.0 450 34.2
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 2.4e-29 134.0 453 33.1
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 4.2e-29 133.3 317 36.3
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.2e-28 131.7 388 29.9
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.1e-28 131.0 402 32.8
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 6.0e-28 129.4 301 36.5
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 3.9e-27 126.7 388 32.2
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 5.1e-27 126.3 393 33.3
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 6.7e-27 125.9 393 33.3
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-26 124.8 451 35.5
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.5e-26 124.8 122 63.1
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 1.9e-26 124.4 382 34.8
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 4.3e-26 123.2 382 30.9
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 3.1e-24 117.1 393 33.6
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 4.0e-24 116.7 203 37.4
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.3e-22 111.7 260 40.4
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.5e-21 106.3 425 30.1
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.5e-18 98.2 406 32.5
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 4.3e-18 96.7 217 40.6
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 4.8e-17 93.2 306 33.0
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 9.0e-16 89.0 109 47.7
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 4.2e-13 80.1 132 39.4
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 2.3e-11 74.3 180 34.4
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 6.7e-11 72.8 199 32.2
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.4e-08 64.3 122 38.5
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 3.4e-07 60.5 64 56.2
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 3.4e-07 60.5 223 29.1
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.0e-06 58.9 176 30.1
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.3e-06 58.5 87 41.4
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 3.8e-06 57.0 87 41.4
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 6.5e-06 56.2 92 41.3


User provided reference genes

Program Settings