Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.5e-143 511.5 246 100.0
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 1.5e-109 399.8 244 79.9
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.5e-106 389.8 244 77.0
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.6e-106 389.0 245 76.3
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.0e-105 387.1 245 76.3
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 5.5e-96 354.8 245 66.5
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 2.1e-95 352.8 246 67.5
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 6.1e-95 351.3 245 65.3
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.1e-93 347.1 245 64.1
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 7.4e-93 344.4 245 64.9
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 9.7e-93 344.0 245 65.7
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 3.7e-92 342.0 245 64.9
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 4.8e-92 341.7 245 66.5
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 5.3e-91 338.2 265 60.8
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 3.5e-90 335.5 243 62.1
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.5e-90 335.1 247 72.1
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 5.9e-90 334.7 243 61.7
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 5.9e-90 334.7 244 63.5
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.3e-89 333.6 245 62.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 6.5e-89 331.3 245 62.0
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.1e-88 330.5 242 62.4
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.9e-88 329.7 245 66.9
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.9e-88 329.7 245 64.1
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.5e-88 328.2 243 63.0
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.2e-87 327.0 243 63.0
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.2e-87 327.0 243 59.7
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.6e-87 326.6 245 60.8
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 1.6e-87 326.6 245 61.2
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 2.1e-87 326.2 245 68.2
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 6.1e-87 324.7 243 61.3
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 6.1e-87 324.7 243 61.3
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.4e-86 323.6 261 59.0
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.8e-86 323.2 246 62.2
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 2.3e-86 322.8 243 61.3
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 4.0e-86 322.0 245 61.2
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.0e-86 322.0 245 61.2
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.0e-86 322.0 245 61.2
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 4.0e-86 322.0 244 62.3
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 6.7e-86 321.2 243 60.9
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 8.8e-86 320.9 246 60.2
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-85 320.5 245 60.8
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 1.1e-85 320.5 245 61.2
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 2.0e-85 319.7 245 59.2
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 3.3e-85 318.9 245 59.6
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 4.4e-85 318.5 245 60.4
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 4.4e-85 318.5 245 60.4
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 5.7e-85 318.2 237 60.8
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 7.5e-85 317.8 250 59.6
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 7.5e-85 317.8 245 59.6
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 7.5e-85 317.8 245 62.9
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.3e-84 317.0 248 59.7
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 2.8e-84 315.8 245 60.0
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 4.8e-84 315.1 249 59.4
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 4.8e-84 315.1 243 60.1
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 6.3e-84 314.7 245 60.8
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 6.3e-84 314.7 247 59.9
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 8.2e-84 314.3 245 60.4
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 8.2e-84 314.3 248 58.5
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 8.2e-84 314.3 248 58.5
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 1.8e-83 313.2 246 58.1
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 5.3e-83 311.6 245 58.0
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 7.0e-83 311.2 276 54.7
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 7.0e-83 311.2 246 58.1
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 9.1e-83 310.8 247 60.7
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.6e-82 310.1 245 60.0
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 1.0e-81 307.4 245 58.4
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 1.3e-81 307.0 244 58.2
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 2.2e-81 306.2 250 57.2
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 2.9e-81 305.8 246 55.7
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 5.0e-81 305.1 245 57.1
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 8.5e-81 304.3 244 57.8
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 3.2e-80 302.4 249 56.2
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 4.2e-80 302.0 245 58.4
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 5.5e-80 301.6 251 57.8
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 9.4e-80 300.8 250 56.8
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.2e-79 300.4 243 57.2
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.2e-79 300.4 243 57.2
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 3.6e-79 298.9 245 58.0
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 4.7e-79 298.5 246 59.8
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 1.8e-78 296.6 243 59.3
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.8e-78 296.6 243 59.7
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.8e-78 296.6 245 60.0
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 4.0e-78 295.4 247 59.5
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 5.2e-78 295.0 243 58.0
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.8e-78 294.7 245 55.1
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 8.8e-78 294.3 243 56.4
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.0e-77 293.1 245 55.9
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 4.4e-77 292.0 245 57.1
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 5.7e-77 291.6 247 56.3
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 9.8e-77 290.8 245 55.5
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 2.2e-76 289.7 245 53.9
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.8e-76 289.3 245 62.4
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 3.7e-76 288.9 249 55.0
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.4e-75 287.0 247 57.1
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 1.8e-75 286.6 245 54.3
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 3.1e-75 285.8 247 55.5
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 3.1e-75 285.8 245 54.7
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 2.0e-74 283.1 247 53.8
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 1.7e-73 280.0 245 55.9
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 6.5e-73 278.1 246 55.7
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.5e-72 276.2 245 54.3
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 2.7e-71 272.7 246 53.3
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 3.6e-71 272.3 246 52.8
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 3.6e-71 272.3 246 52.8
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 2.6e-69 266.2 246 50.0
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 4.4e-69 265.4 252 52.4
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.7e-68 263.5 254 50.4
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 4.9e-68 261.9 245 48.2
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.8e-67 260.0 245 57.1
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 7.0e-67 258.1 245 52.2
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 5.9e-66 255.0 262 47.3
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 8.6e-65 251.1 249 48.6
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.5e-64 250.4 245 49.4
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 3.3e-64 249.2 240 51.7
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.6e-63 246.9 249 48.2
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 3.6e-63 245.7 179 64.2
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.1e-59 234.2 172 64.0
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.8e-59 233.4 171 61.4
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 7.0e-59 231.5 244 45.5
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.7e-57 226.9 243 49.0
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 6.6e-57 224.9 175 58.9
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 4.3e-56 222.2 248 44.4
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 9.5e-56 221.1 247 47.8
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 3.6e-55 219.2 222 47.7
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 1.5e-53 213.8 242 45.0
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 4.4e-53 212.2 252 44.0
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.6e-50 203.8 235 41.7
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.0e-50 203.4 209 47.4
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 4.6e-50 202.2 247 44.9
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.3e-49 200.7 214 43.9
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.0e-49 199.5 241 44.8
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 8.6e-49 198.0 282 38.3
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 1.9e-48 196.8 246 38.6
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 4.4e-45 185.7 191 50.3
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.7e-44 183.7 191 49.7
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.1e-40 171.0 244 36.5
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.8e-38 163.7 151 53.0
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 4.0e-38 162.5 123 62.6
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 8.4e-36 154.8 129 58.1
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 3.0e-33 146.4 116 61.2
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 2.4e-30 136.7 268 32.8
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.3e-28 131.0 167 38.9
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.7e-26 123.2 135 48.9
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 1.5e-24 117.5 168 39.9
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 1.9e-24 117.1 208 36.5
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 9.6e-24 114.8 159 38.4
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.4e-22 110.2 59 86.4
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.9e-20 102.4 101 47.5
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.6e-18 97.4 67 68.7
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 7.4e-16 88.6 275 25.8
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 1.1e-14 84.7 170 37.6
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.8e-14 84.0 82 41.5
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 5.3e-14 82.4 78 46.2
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 4.5e-13 79.3 89 47.2
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 6.4e-12 75.5 73 47.9
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 6.4e-12 75.5 73 47.9
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 2.4e-11 73.6 253 26.5
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 9.3e-11 71.6 257 26.1
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 1.6e-10 70.9 266 24.8
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 4.6e-10 69.3 76 42.1
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 7.9e-10 68.6 259 24.3
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 7.9e-10 68.6 259 24.3
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 6.7e-09 65.5 242 24.4
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 7.4e-08 62.0 129 27.9
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 2.4e-06 57.0 130 28.5


User provided reference genes

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