Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 3.3e-282 974.5 556 100.0
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 2.8e-156 556.2 623 53.8
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.8e-119 433.3 658 52.3
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 9.2e-99 365.2 599 51.9
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.6e-98 364.4 598 51.3
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 2.7e-98 363.6 599 51.6
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 5.1e-73 279.6 602 37.7
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 9.6e-72 275.4 680 34.3
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 2.8e-71 273.9 564 38.1
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 5.8e-69 266.2 633 35.5
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 2.2e-68 264.2 646 34.8
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 7.1e-67 259.2 559 36.9
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 1.2e-66 258.5 505 37.8
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 6.0e-66 256.1 611 35.4
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 2.3e-65 254.2 558 34.8
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 7.4e-64 249.2 569 36.6
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 3.1e-62 243.8 583 34.6
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 4.0e-62 243.4 562 41.3
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 4.0e-62 243.4 565 36.1
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 6.9e-62 242.7 615 34.3
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 2.6e-61 240.7 267 52.1
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.9e-60 237.3 565 34.7
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.1e-59 235.3 616 32.8
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 7.1e-59 232.6 594 33.5
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 1.2e-58 231.9 528 42.6
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 7.9e-58 229.2 566 34.8
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 1.5e-56 224.9 338 45.0
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 2.5e-56 224.2 577 34.3
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 3.3e-56 223.8 307 45.6
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 2.1e-55 221.1 300 45.7
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 4.8e-55 219.9 589 39.9
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 1.7e-52 211.5 579 33.0
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 2.2e-52 211.1 579 33.0
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 2.2e-52 211.1 586 33.3
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 4.9e-52 209.9 352 42.6
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 2.5e-51 207.6 320 42.2
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 4.2e-51 206.8 309 43.4
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 3.5e-50 203.8 316 43.4
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 7.9e-50 202.6 263 45.6
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 1.8e-49 201.4 573 33.9
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 5.1e-49 199.9 312 43.9
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.1e-48 198.7 383 38.1
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 5.7e-48 196.4 557 32.9
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 9.7e-48 195.7 384 39.1
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.3e-47 195.3 279 46.2
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 1.6e-47 194.9 274 44.9
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 8.2e-47 192.6 362 39.8
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.4e-46 191.0 304 42.8
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 3.1e-46 190.7 378 40.7
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 5.3e-46 189.9 362 36.7
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 9.0e-46 189.1 499 32.5
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 9.0e-46 189.1 267 45.3
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 9.0e-46 189.1 327 41.3
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.2e-45 188.7 267 45.3
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 1.2e-45 188.7 300 41.7
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.2e-45 188.7 295 41.0
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 2.0e-45 188.0 557 31.2
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 2.6e-45 187.6 560 33.0
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 2.6e-45 187.6 376 39.1
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 3.4e-45 187.2 306 40.5
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 2.2e-44 184.5 267 44.9
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 2.9e-44 184.1 541 33.3
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 2.9e-44 184.1 378 37.6
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 5.0e-44 183.3 267 44.9
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 5.0e-44 183.3 267 44.9
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 8.5e-44 182.6 283 42.0
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 1.4e-43 181.8 267 44.6
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 2.5e-43 181.0 309 41.4
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 7.2e-43 179.5 356 35.7
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 7.2e-43 179.5 340 40.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.6e-42 178.3 219 48.4
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.6e-42 178.3 328 39.3
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.1e-42 177.9 328 39.3
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 2.7e-42 177.6 311 41.2
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 6.1e-42 176.4 229 45.9
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 7.9e-42 176.0 327 39.4
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 1.0e-41 175.6 378 37.6
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 1.4e-41 175.3 376 37.0
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.0e-41 174.1 274 43.8
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.9e-41 173.7 327 38.8
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 5.1e-41 173.3 222 47.7
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 6.7e-41 172.9 384 37.0
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 3.3e-40 170.6 185 51.9
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 9.7e-40 169.1 274 43.1
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 2.2e-39 167.9 230 45.2
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 4.8e-39 166.8 573 36.5
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 8.2e-39 166.0 326 38.0
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 1.8e-38 164.9 376 37.8
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 5.3e-38 163.3 363 34.4
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 2.0e-37 161.4 275 41.1
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 2.0e-37 161.4 275 41.1
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 2.6e-37 161.0 564 29.1
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.4e-37 160.6 557 29.4
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 7.2e-35 152.9 381 33.3
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 3.0e-33 147.5 215 43.3
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 7.0e-30 136.3 179 46.4
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 1.5e-29 135.2 378 32.5
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 2.2e-28 131.3 178 44.4
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.2e-28 131.3 234 41.5
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 2.9e-28 131.0 239 39.7
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 2.5e-27 127.9 166 47.0
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 4.2e-27 127.1 164 45.1
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 5.5e-27 126.7 175 39.4
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 4.7e-26 123.6 157 47.1
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.6e-24 117.9 166 45.8
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 2.6e-24 117.9 153 47.7
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.2e-21 109.0 197 36.0
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 7.7e-21 106.3 207 35.7
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 1.0e-20 105.9 170 42.4
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 1.9e-19 101.7 173 37.0
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 3.2e-19 100.9 218 39.4
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 2.1e-18 98.2 384 29.7
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 1.8e-17 95.1 119 44.5
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 3.0e-17 94.4 101 49.5
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 1.5e-16 92.0 226 32.3
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 3.3e-16 90.9 426 28.4
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 7.5e-16 89.7 211 32.7
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 1.3e-15 89.0 112 44.6
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 6.3e-15 86.7 131 42.7
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.2e-13 82.4 211 29.4
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 3.5e-13 80.9 101 46.5
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.0e-12 79.3 184 31.5
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.5e-11 75.5 180 30.0
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.9e-11 75.1 160 36.2
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 1.9e-11 75.1 367 26.2
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.2e-10 72.4 169 29.6
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 3.6e-10 70.9 206 28.6
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 3.6e-10 70.9 178 30.3
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 4.7e-10 70.5 184 28.8
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 6.1e-10 70.1 275 27.6
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 1.5e-08 65.5 137 32.8
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 2.6e-08 64.7 191 29.3
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.4e-08 63.9 122 36.1
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 5.7e-08 63.5 127 34.6
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 9.8e-08 62.8 131 31.3
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 9.8e-08 62.8 172 29.1
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 1.7e-07 62.0 71 47.9
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 1.7e-07 62.0 191 28.8
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.7e-07 62.0 157 26.8
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.8e-07 61.2 131 31.3
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 2.8e-07 61.2 131 31.3
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 6.3e-07 60.1 151 30.5
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 6.3e-07 60.1 175 27.4
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 8.3e-07 59.7 184 27.2
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 8.3e-07 59.7 184 27.2
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 8.3e-07 59.7 184 27.2
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 1.4e-06 58.9 151 31.1
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.8e-06 58.5 147 27.9
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 1.8e-06 58.5 131 30.5
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 2.4e-06 58.2 147 28.6
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.1e-06 57.8 389 25.7
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.1e-06 57.8 123 31.7
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 3.1e-06 57.8 151 29.1
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 3.1e-06 57.8 151 29.8
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 3.1e-06 57.8 106 35.8
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 3.1e-06 57.8 106 35.8
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 5.4e-06 57.0 126 31.0
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 5.4e-06 57.0 146 30.8
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 5.4e-06 57.0 151 30.5
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 5.4e-06 57.0 151 30.5
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 5.4e-06 57.0 151 30.5
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 7.0e-06 56.6 181 26.5
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 9.1e-06 56.2 85 40.0
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 9.1e-06 56.2 151 27.2


User provided reference genes

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