Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.3e-156 555.4 267 100.0
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.4e-76 289.7 274 56.2
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.9e-70 270.0 306 48.7
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.2e-69 265.0 284 53.5
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 3.8e-66 255.8 306 48.0
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 4.9e-66 255.4 288 50.7
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 6.4e-66 255.0 305 48.5
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 7.1e-65 251.5 305 47.9
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 9.3e-65 251.1 298 49.0
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.5e-64 249.2 310 47.1
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 6.0e-64 248.4 298 48.0
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 5.1e-63 245.4 302 48.3
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.9e-62 243.4 308 45.8
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 3.3e-62 242.7 278 50.0
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 9.6e-62 241.1 305 47.5
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.3e-61 240.7 303 45.5
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.1e-61 240.0 308 45.1
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 4.8e-61 238.8 304 45.1
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 6.2e-61 238.4 308 44.8
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.1e-60 237.7 302 44.7
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 1.7e-58 230.3 301 46.2
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.7e-58 230.3 293 45.1
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.9e-58 229.6 337 42.4
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 3.8e-58 229.2 302 44.7
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 8.4e-58 228.0 295 44.1
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 8.4e-58 228.0 293 45.4
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 8.4e-58 228.0 293 45.4
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.1e-57 227.6 275 49.5
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.4e-57 227.3 277 44.4
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.9e-57 226.9 293 45.1
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 2.5e-57 226.5 277 48.4
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 4.2e-57 225.7 298 45.6
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 5.5e-57 225.3 286 44.4
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 9.3e-57 224.6 300 43.0
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.2e-56 224.2 301 41.9
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.2e-56 224.2 311 43.7
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.6e-56 223.8 277 47.7
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.7e-56 223.0 311 43.7
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.7e-56 223.0 307 43.0
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.5e-56 222.6 274 48.2
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 7.9e-56 221.5 281 46.3
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 7.9e-56 221.5 277 46.9
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 1.3e-55 220.7 220 53.6
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.3e-55 220.7 276 48.6
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.3e-55 219.9 304 43.8
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 3.0e-55 219.5 302 42.7
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 3.0e-55 219.5 307 43.3
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.5e-54 217.2 304 45.1
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.9e-54 216.9 265 48.3
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.9e-54 216.9 265 48.3
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.9e-54 216.9 297 43.8
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.9e-54 216.9 300 44.3
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 2.5e-54 216.5 265 48.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 2.5e-54 216.5 306 43.5
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.5e-54 216.5 292 45.2
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 3.3e-54 216.1 292 45.2
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 4.3e-54 215.7 296 41.9
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 7.4e-54 214.9 265 47.5
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 7.4e-54 214.9 265 47.5
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 3.7e-53 212.6 310 41.3
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.8e-53 212.2 311 41.2
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 6.3e-53 211.8 271 46.1
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 6.3e-53 211.8 271 46.1
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 8.2e-53 211.5 304 41.1
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.1e-52 211.1 292 44.5
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.1e-52 211.1 304 41.1
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.1e-52 211.1 304 44.4
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 1.4e-52 210.7 290 45.2
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 2.4e-52 209.9 324 41.0
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 3.1e-52 209.5 302 43.0
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 3.1e-52 209.5 306 42.8
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.1e-52 209.5 292 44.5
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 5.3e-52 208.8 302 42.7
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.5e-51 207.2 309 42.1
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.5e-51 207.2 304 43.1
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 2.0e-51 206.8 286 41.3
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 3.4e-51 206.1 268 44.4
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.5e-51 205.7 282 40.1
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 7.6e-51 204.9 304 40.5
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 2.9e-50 203.0 309 41.7
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 3.8e-50 202.6 294 46.3
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 5.0e-50 202.2 305 43.0
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.1e-49 201.1 308 41.6
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.9e-49 200.3 288 41.3
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 2.5e-49 199.9 304 40.1
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 4.2e-49 199.1 343 37.0
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 4.2e-49 199.1 293 42.7
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.6e-48 197.2 295 40.7
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.1e-48 196.8 298 41.9
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 6.1e-48 195.3 285 41.8
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 6.1e-48 195.3 296 40.2
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 6.1e-48 195.3 296 40.2
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 6.1e-48 195.3 301 39.5
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 7.9e-48 194.9 294 41.2
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.8e-47 193.7 289 41.5
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 1.8e-47 193.7 306 38.2
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 2.3e-47 193.4 302 38.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 6.7e-47 191.8 292 39.7
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.1e-46 191.0 306 39.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.8e-45 186.4 262 45.8
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 4.8e-45 185.7 267 41.9
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 4.8e-45 185.7 294 39.8
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 4.1e-44 182.6 273 42.9
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.6e-43 179.9 280 41.1
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 8.5e-42 174.9 199 49.2
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.1e-41 174.5 285 41.4
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.7e-37 159.5 240 41.2
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 5.3e-36 155.6 173 48.0
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.2e-35 154.5 239 43.9
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 5.0e-34 149.1 122 57.4
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 6.5e-34 148.7 157 49.0
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.5e-33 146.7 282 36.9
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 2.5e-33 146.7 237 39.7
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.4e-31 141.0 273 35.9
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 5.1e-31 139.0 235 35.3
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 6.3e-29 132.1 120 54.2
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 2.9e-26 123.2 120 50.0
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 3.8e-26 122.9 120 50.0
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 4.2e-25 119.4 241 35.7
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.7e-24 116.7 95 62.1
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.3e-23 113.6 97 59.8
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 6.7e-23 112.1 90 64.4
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 9.7e-22 108.2 240 34.2
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 7.0e-20 102.1 178 39.9
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.1e-17 94.7 273 31.5
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 8.8e-15 85.1 181 36.5
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.2e-13 80.5 77 57.1
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 3.1e-12 76.6 237 29.5
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 7.7e-11 72.0 177 32.2
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.3e-10 71.2 180 29.4
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 5.0e-10 69.3 166 32.5
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 6.5e-10 68.9 62 61.3
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 8.5e-10 68.6 236 27.5
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.2e-09 66.6 63 55.6
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.1e-08 63.9 54 55.6
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.7e-08 63.5 90 42.2
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 6.1e-08 62.4 64 48.4
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 3.4e-06 56.6 51 43.1
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.4e-06 56.2 33 72.7


User provided reference genes

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