Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.5e-98 362.1 178 100.0
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 4.6e-36 155.2 118 61.9
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.3e-35 153.7 97 82.5
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.8e-35 153.3 125 64.0
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 2.3e-35 152.9 113 63.7
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 6.7e-35 151.4 102 67.6
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.1e-34 150.6 130 60.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.5e-34 150.2 132 56.1
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.9e-34 149.8 115 62.6
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.9e-34 149.8 145 51.7
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.9e-34 149.8 143 55.2
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.9e-34 149.8 127 59.8
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 2.5e-34 149.4 116 60.3
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.5e-34 149.4 119 60.5
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 3.3e-34 149.1 122 58.2
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 3.3e-34 149.1 154 51.9
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 4.3e-34 148.7 126 57.1
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.3e-34 148.7 145 53.1
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 5.7e-34 148.3 121 61.2
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.7e-34 148.3 140 57.1
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.3e-33 147.1 98 72.4
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.3e-33 147.1 142 52.8
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.6e-33 146.7 142 52.1
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.2e-33 146.4 126 58.7
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.8e-33 146.0 126 58.7
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.8e-33 146.0 142 52.1
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 3.7e-33 145.6 144 51.4
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.7e-33 145.6 132 54.5
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 4.8e-33 145.2 118 57.6
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 4.8e-33 145.2 122 58.2
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.8e-33 145.2 108 62.0
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.3e-33 144.8 96 77.1
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 6.3e-33 144.8 141 53.9
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 6.3e-33 144.8 110 62.7
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 6.3e-33 144.8 141 53.9
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.1e-32 144.1 111 61.3
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.1e-32 144.1 92 72.8
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.4e-32 143.7 104 63.5
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.4e-32 143.7 104 63.5
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.4e-32 143.7 104 63.5
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.4e-32 143.7 104 63.5
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.4e-32 143.7 134 55.2
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.4e-32 143.7 123 57.7
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.8e-32 143.3 123 57.7
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.8e-32 143.3 114 57.9
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.4e-32 142.9 110 64.5
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.4e-32 142.9 108 61.1
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 4.1e-32 142.1 127 57.5
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 4.1e-32 142.1 136 53.7
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 4.1e-32 142.1 136 53.7
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 5.3e-32 141.7 125 56.0
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 6.9e-32 141.4 119 58.8
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 6.9e-32 141.4 132 54.5
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 6.9e-32 141.4 148 50.7
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 9.0e-32 141.0 102 68.6
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 9.0e-32 141.0 115 57.4
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.2e-31 140.6 120 60.0
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.2e-31 140.6 121 59.5
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.5e-31 140.2 95 67.4
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.5e-31 140.2 93 68.8
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.0e-31 139.8 85 76.5
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.0e-31 139.8 118 58.5
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.6e-31 139.4 85 74.1
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.6e-31 139.4 102 66.7
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.6e-31 139.4 92 71.7
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.6e-31 139.4 131 55.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.4e-31 139.0 86 74.4
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.4e-31 139.0 102 65.7
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 3.4e-31 139.0 117 60.7
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 4.5e-31 138.7 95 68.4
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 4.5e-31 138.7 146 52.1
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.5e-31 138.7 85 75.3
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 5.9e-31 138.3 85 75.3
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 5.9e-31 138.3 134 54.5
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 5.9e-31 138.3 128 54.7
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 5.9e-31 138.3 127 55.1
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 7.6e-31 137.9 135 52.6
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.0e-30 137.5 87 72.4
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.0e-30 137.5 108 63.0
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.0e-30 137.5 99 64.6
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 1.3e-30 137.1 127 56.7
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.7e-30 136.7 90 67.8
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 2.2e-30 136.3 122 57.4
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.9e-30 136.0 94 70.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 5.0e-30 135.2 86 70.9
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 5.0e-30 135.2 100 66.0
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 5.0e-30 135.2 135 53.3
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 6.5e-30 134.8 87 70.1
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 6.5e-30 134.8 98 61.2
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.1e-29 134.0 130 53.1
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.4e-29 133.7 117 57.3
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.9e-29 133.3 101 64.4
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.9e-29 133.3 133 51.1
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.9e-29 133.3 99 61.6
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 4.2e-29 132.1 92 66.3
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.2e-28 130.6 93 66.7
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.6e-28 130.2 94 64.9
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.6e-28 130.2 134 50.7
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.6e-28 130.2 134 50.7
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.6e-28 130.2 94 64.9
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.6e-28 129.0 126 49.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.6e-28 128.6 130 51.5
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 4.6e-28 128.6 134 50.7
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 6.1e-28 128.3 95 60.0
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 7.9e-28 127.9 94 64.9
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 7.9e-28 127.9 94 64.9
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 7.9e-28 127.9 98 61.2
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.0e-27 127.5 74 75.7
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.0e-27 127.5 127 52.0
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.0e-27 127.5 112 57.1
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.8e-27 126.7 94 63.8
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.3e-27 126.3 94 63.8
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.9e-27 125.6 122 53.3
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 5.1e-27 125.2 93 63.4
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 5.1e-27 125.2 93 63.4
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 5.1e-27 125.2 93 63.4
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 5.1e-27 125.2 93 63.4
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 5.1e-27 125.2 93 63.4
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 6.7e-27 124.8 93 63.4
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 6.7e-27 124.8 93 63.4
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 6.7e-27 124.8 123 54.5
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 8.8e-27 124.4 93 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.5e-26 123.6 153 45.8
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 5.7e-26 121.7 142 45.8
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.8e-25 119.4 124 49.2
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 3.7e-25 119.0 123 48.0
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 6.3e-25 118.2 162 45.7
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 7.7e-23 111.3 76 67.1
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 2.2e-22 109.8 104 56.7
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 2.2e-22 109.8 116 48.3
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 4.2e-21 105.5 94 57.4
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.2e-20 104.0 106 50.0
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.1e-20 103.2 61 72.1
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 4.7e-20 102.1 112 47.3
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.0e-19 100.9 68 67.6
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.0e-19 100.9 81 59.3
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 2.3e-19 99.8 100 51.0
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.5e-18 97.1 60 76.7
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 3.3e-18 95.9 84 57.1
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.8e-16 90.1 86 55.8
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.8e-16 90.1 100 51.0
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 1.2e-15 87.4 92 47.8
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.0e-15 86.7 90 48.9
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 2.2e-14 83.2 102 42.2
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.6e-12 77.0 141 34.8
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 6.1e-12 75.1 79 46.8
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.9e-06 56.2 94 38.3
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 2.9e-06 56.2 56 42.9
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 3.8e-06 55.8 49 46.9
AUR62024787 Chenopodium quinoa HOM05D010307 ORTHO05D016220 3.8e-06 55.8 61 42.6
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 6.5e-06 55.1 52 40.4


User provided reference genes

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