Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.3e-34 149.1 71 100.0
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 5.4e-20 100.5 79 69.6
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 4.6e-11 70.9 40 82.5
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 7.8e-11 70.1 40 80.0
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 7.8e-11 70.1 40 82.5
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 7.8e-11 70.1 40 82.5
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 7.8e-11 70.1 79 54.4
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 1.0e-10 69.7 43 79.1
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 1.0e-10 69.7 43 79.1
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.0e-10 69.7 82 54.9
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.0e-10 69.7 82 54.9
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 2.3e-10 68.6 40 80.0
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 3.0e-10 68.2 78 52.6
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 3.9e-10 67.8 79 51.9
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 3.9e-10 67.8 79 54.4
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 3.9e-10 67.8 81 54.3
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 6.6e-10 67.0 76 50.0
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 6.6e-10 67.0 40 77.5
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 6.6e-10 67.0 40 77.5
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 6.6e-10 67.0 75 54.7
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 6.6e-10 67.0 40 77.5
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 8.6e-10 66.6 79 51.9
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 8.6e-10 66.6 81 51.9
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 8.6e-10 66.6 79 51.9
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 8.6e-10 66.6 40 77.5
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 1.1e-09 66.2 43 74.4
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 1.1e-09 66.2 40 77.5
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 1.1e-09 66.2 80 51.2
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 1.1e-09 66.2 40 82.5
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 1.5e-09 65.9 79 50.6
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 1.5e-09 65.9 78 53.8
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 1.5e-09 65.9 40 70.0
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 1.9e-09 65.5 40 72.5
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 1.9e-09 65.5 83 49.4
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 1.9e-09 65.5 79 48.1
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 2.5e-09 65.1 78 53.8
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 3.3e-09 64.7 40 77.5
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 3.3e-09 64.7 43 72.1
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 4.3e-09 64.3 40 77.5
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 4.3e-09 64.3 81 48.1
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 4.3e-09 64.3 79 50.6
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 4.3e-09 64.3 40 75.0
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 4.3e-09 64.3 79 48.1
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 4.3e-09 64.3 80 53.8
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 4.3e-09 64.3 79 49.4
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 4.3e-09 64.3 80 50.0
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 5.6e-09 63.9 40 75.0
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 7.3e-09 63.5 40 72.5
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 7.3e-09 63.5 40 75.0
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 7.3e-09 63.5 79 50.6
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 9.5e-09 63.2 40 70.0
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 1.2e-08 62.8 43 72.1
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 1.2e-08 62.8 76 48.7
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 1.2e-08 62.8 80 52.5
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 1.2e-08 62.8 40 72.5
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 1.2e-08 62.8 40 70.0
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 1.6e-08 62.4 80 50.0
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.6e-08 62.4 40 75.0
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 1.6e-08 62.4 40 75.0
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 2.1e-08 62.0 40 75.0
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 2.1e-08 62.0 77 49.4
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 2.1e-08 62.0 40 75.0
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 2.8e-08 61.6 40 70.0
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 3.6e-08 61.2 40 70.0
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 3.6e-08 61.2 40 67.5
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 3.6e-08 61.2 79 49.4
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 4.7e-08 60.8 40 67.5
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 4.7e-08 60.8 51 58.8
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 4.7e-08 60.8 40 67.5
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 4.7e-08 60.8 39 66.7
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 4.7e-08 60.8 73 54.8
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 4.7e-08 60.8 40 70.0
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 6.2e-08 60.5 76 46.1
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 6.2e-08 60.5 76 47.4
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 8.1e-08 60.1 37 73.0
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 8.1e-08 60.1 37 73.0
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 8.1e-08 60.1 37 73.0
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 8.1e-08 60.1 81 46.9
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 1.1e-07 59.7 40 67.5
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 1.1e-07 59.7 36 75.0
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 1.4e-07 59.3 76 48.7
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 1.8e-07 58.9 76 48.7
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 1.8e-07 58.9 40 75.0
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 2.4e-07 58.5 37 70.3
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 4.0e-07 57.8 40 70.0
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 4.0e-07 57.8 40 72.5
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 6.8e-07 57.0 79 46.8
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 1.5e-06 55.8 38 71.1
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 3.4e-06 54.7 29 86.2
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 9.9e-06 53.1 34 73.5


User provided reference genes

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