Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 8.8e-182 640.2 329 100.0
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.9e-44 183.3 391 38.9
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 7.5e-40 168.7 386 36.0
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.8e-39 166.8 417 34.1
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 8.3e-39 165.2 387 34.1
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.1e-34 150.6 386 31.6
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.6e-34 149.8 389 32.4
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 8.0e-34 148.7 377 33.2
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 2.0e-32 144.1 374 33.2
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 9.8e-32 141.7 387 32.3
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.8e-31 140.2 381 30.7
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 6.3e-31 139.0 378 34.4
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.4e-30 137.1 380 32.9
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.1e-30 136.3 393 32.3
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 5.4e-30 136.0 390 32.8
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 5.4e-30 136.0 370 31.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.7e-29 133.7 379 31.9
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 3.5e-29 133.3 387 31.3
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.5e-29 132.9 381 34.6
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 4.5e-29 132.9 370 31.9
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 5.9e-29 132.5 261 39.5
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 3.8e-28 129.8 395 32.4
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.8e-28 129.8 378 32.0
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 5.0e-28 129.4 324 33.0
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.6e-28 129.0 358 32.7
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 8.6e-28 128.6 389 32.6
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 8.6e-28 128.6 375 32.5
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.1e-27 128.3 404 30.9
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.9e-27 127.5 381 29.9
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.9e-27 127.5 381 29.9
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.9e-27 127.5 392 31.4
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.9e-27 127.5 408 30.4
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.3e-27 126.3 368 31.8
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 4.3e-27 126.3 369 31.7
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.3e-27 126.3 384 30.5
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 5.6e-27 125.9 384 32.0
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 5.6e-27 125.9 385 30.9
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 9.5e-27 125.2 382 30.4
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 9.5e-27 125.2 382 31.9
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 9.5e-27 125.2 393 29.8
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.2e-26 124.8 213 41.8
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.6e-26 124.4 374 30.2
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.6e-26 124.4 209 41.1
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.6e-26 124.4 368 32.6
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.8e-26 123.6 381 29.1
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.8e-26 123.6 375 32.0
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 3.6e-26 123.2 371 32.3
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 3.6e-26 123.2 200 40.0
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 4.7e-26 122.9 401 29.2
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 8.0e-26 122.1 379 31.4
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.0e-25 121.7 416 31.2
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.4e-25 121.3 369 32.2
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.0e-25 119.8 375 31.5
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 6.8e-25 119.0 242 35.5
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 8.9e-25 118.6 384 32.3
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.5e-24 117.9 231 34.6
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.6e-24 117.1 318 34.3
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.4e-24 116.7 260 35.8
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 4.4e-24 116.3 381 32.8
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 4.4e-24 116.3 218 38.5
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 5.8e-24 115.9 192 41.1
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 7.5e-24 115.5 345 30.1
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 9.8e-24 115.2 240 36.2
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.3e-23 114.8 246 37.8
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.3e-23 114.8 246 37.8
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-23 114.8 391 28.6
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.3e-23 114.8 346 30.3
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.7e-23 114.4 397 28.7
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.7e-23 114.4 397 28.7
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-23 114.0 246 37.4
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-23 114.0 216 40.3
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.7e-23 113.2 389 29.6
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 4.9e-23 112.8 372 30.4
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 4.9e-23 112.8 235 34.5
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 6.4e-23 112.5 235 34.9
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 8.3e-23 112.1 371 28.8
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 8.3e-23 112.1 386 28.2
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.1e-22 111.7 386 28.2
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.1e-22 111.7 377 29.4
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.4e-22 111.3 377 28.9
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-22 111.3 238 37.8
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.4e-22 111.3 222 35.1
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.4e-22 110.5 395 27.1
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.4e-22 110.5 364 33.0
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 3.2e-22 110.2 413 30.0
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.2e-22 110.2 387 27.9
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 5.4e-22 109.4 384 28.4
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 7.0e-22 109.0 385 28.6
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 7.0e-22 109.0 398 28.6
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 7.0e-22 109.0 376 31.6
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.0e-22 109.0 223 34.1
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 9.2e-22 108.6 353 30.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.6e-21 107.8 386 29.5
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.6e-21 107.8 386 29.8
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.6e-21 107.8 214 38.3
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 2.0e-21 107.5 366 31.7
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 2.7e-21 107.1 397 28.5
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 2.7e-21 107.1 393 29.0
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 3.5e-21 106.7 397 28.2
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 4.6e-21 106.3 206 35.9
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 6.0e-21 105.9 211 38.4
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 6.0e-21 105.9 384 28.9
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 7.8e-21 105.5 397 28.7
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 7.8e-21 105.5 368 28.8
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.0e-20 105.1 371 29.4
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.7e-20 104.4 216 33.3
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.3e-20 104.0 377 30.2
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 3.0e-20 103.6 396 28.8
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.0e-20 103.6 266 34.6
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 3.9e-20 103.2 359 29.5
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.9e-20 103.2 330 31.8
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 5.0e-20 102.8 386 27.7
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.5e-19 100.5 215 34.0
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 4.3e-19 99.8 209 34.4
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 4.3e-19 99.8 211 39.3
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 9.5e-19 98.6 207 36.7
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 9.5e-19 98.6 331 28.1
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.6e-18 97.8 221 34.8
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.1e-18 97.4 237 32.1
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.8e-18 97.1 209 38.3
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.7e-18 96.3 205 37.1
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 4.7e-18 96.3 227 37.0
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 6.2e-18 95.9 248 31.9
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 6.2e-18 95.9 226 31.9
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 6.2e-18 95.9 223 31.4
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.1e-17 95.1 203 35.5
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.4e-17 94.7 401 29.4
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.3e-17 94.0 224 32.6
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.3e-17 94.0 205 38.5
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 4.0e-17 93.2 350 29.4
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 4.0e-17 93.2 215 34.0
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 5.2e-17 92.8 205 34.1
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 6.8e-17 92.4 406 28.8
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 3.4e-16 90.1 335 29.6
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 4.4e-16 89.7 225 34.2
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 4.4e-16 89.7 234 32.1
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 9.8e-16 88.6 364 27.2
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.7e-15 87.8 201 32.3
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 2.2e-15 87.4 215 31.6
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.7e-15 86.7 217 29.0
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 3.7e-15 86.7 249 34.1
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 4.9e-15 86.3 211 31.8
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.1e-14 85.1 229 32.3
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.4e-14 84.7 261 31.0
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 5.4e-14 82.8 54 64.8
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 7.0e-14 82.4 218 31.2
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.1e-13 80.9 370 27.3
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.1e-13 80.9 227 28.2
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.7e-12 77.8 377 26.3
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.7e-12 77.8 382 27.2
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.6e-12 75.9 173 34.7
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 6.6e-12 75.9 173 34.7
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 8.6e-12 75.5 355 28.7
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 9.5e-11 72.0 400 27.0
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.6e-10 71.2 180 32.8
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 6.2e-10 69.3 90 43.3
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.0e-09 66.6 172 30.8
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 6.8e-09 65.9 52 55.8
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.9e-09 65.5 124 33.9
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.3e-07 58.9 337 25.2
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.1e-06 58.5 232 25.9


User provided reference genes

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