Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 4.2e-186 655.6 686 100.0
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 3.4e-79 300.4 337 83.7
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 4.6e-76 290.0 546 77.3
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 7.4e-74 282.7 501 83.0
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 7.4e-74 282.7 337 80.7
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 1.1e-72 278.9 339 78.5
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 3.4e-71 273.9 330 80.0
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 7.7e-71 272.7 500 81.8
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 1.0e-70 272.3 337 78.6
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 1.3e-70 271.9 338 79.6
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 7.2e-69 266.2 333 77.2
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 2.7e-68 264.2 333 76.9
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 6.1e-68 263.1 325 73.8
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 7.9e-68 262.7 322 78.9
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 7.9e-68 262.7 337 78.6
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 1.8e-67 261.5 323 79.9
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 1.8e-67 261.5 622 67.4
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.8e-67 261.5 337 77.2
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 1.5e-66 258.5 337 77.4
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 1.5e-66 258.5 337 77.4
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.0e-66 258.1 337 76.3
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 2.0e-66 258.1 337 76.6
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 2.6e-66 257.7 164 68.9
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 2.6e-66 257.7 328 78.4
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 2.6e-66 257.7 339 78.5
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 2.6e-66 257.7 321 80.7
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 3.3e-66 257.3 336 77.7
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 5.7e-66 256.5 158 70.9
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 5.7e-66 256.5 326 79.1
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 9.7e-66 255.8 325 72.9
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 9.7e-66 255.8 338 76.3
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 1.3e-65 255.4 337 77.4
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 1.7e-65 255.0 337 77.2
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 3.7e-65 253.8 345 75.9
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 4.8e-65 253.4 330 78.5
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 8.2e-65 252.7 157 69.4
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 1.1e-64 252.3 322 76.7
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 1.1e-64 252.3 338 76.9
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 1.1e-64 252.3 326 78.5
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 1.4e-64 251.9 324 79.0
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.4e-64 251.9 338 77.2
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.8e-64 251.5 549 74.3
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 1.5e-63 248.4 338 76.6
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.6e-63 247.7 167 65.3
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 3.4e-63 247.3 335 75.2
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 3.4e-63 247.3 337 76.3
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 2.9e-62 244.2 338 74.6
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 3.8e-62 243.8 158 68.4
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 5.0e-62 243.4 154 70.1
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 5.0e-62 243.4 322 78.6
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 6.5e-62 243.0 165 64.2
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 8.5e-62 242.7 165 64.2
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 1.1e-61 242.3 331 76.1
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 1.9e-61 241.5 165 63.6
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.9e-61 241.5 737 49.3
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 9.4e-61 239.2 322 73.3
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 9.4e-61 239.2 337 75.1
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 4.7e-60 236.9 158 65.2
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 1.0e-59 235.7 340 73.2
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 1.0e-59 235.7 153 69.3
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 2.3e-59 234.6 338 63.0
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 3.0e-59 234.2 699 60.9
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 8.8e-59 232.6 165 63.6
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 7.4e-58 229.6 669 65.9
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 1.7e-57 228.4 322 74.2
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 4.8e-57 226.9 168 63.7
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 4.8e-57 226.9 322 74.2
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 1.4e-56 225.3 149 63.8
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 3.1e-56 224.2 161 62.7
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 4.1e-56 223.8 337 75.4
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 5.3e-56 223.4 151 64.2
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 1.6e-55 221.9 157 65.0
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 2.6e-55 221.1 157 61.8
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 2.6e-55 221.1 165 59.4
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 1.7e-54 218.4 144 66.0
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 2.2e-54 218.0 144 64.6
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 2.9e-54 217.6 303 78.5
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 3.2e-53 214.2 157 58.6
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 1.2e-52 212.2 143 64.3
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 6.1e-52 209.9 336 70.8
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 1.0e-51 209.1 673 64.3
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 1.0e-51 209.1 673 64.3
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 5.2e-51 206.8 172 52.3
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 6.7e-51 206.5 315 74.0
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 8.8e-51 206.1 156 57.1
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 8.8e-51 206.1 539 71.6
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 8.8e-51 206.1 317 75.7
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 1.2e-50 205.7 156 57.1
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 3.7e-49 200.7 149 60.4
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.1e-45 189.1 550 37.1
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 4.4e-42 177.2 125 65.6
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 1.3e-38 165.6 130 59.2
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 8.6e-38 162.9 322 70.2
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 5.5e-37 160.2 97 73.2
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 3.0e-35 154.5 123 56.1
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 6.1e-28 130.2 69 79.7
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.4e-27 129.0 239 63.6
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 8.9e-27 126.3 102 53.9
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 4.4e-26 124.0 105 51.4
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 3.7e-25 120.9 220 89.5
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.5e-23 114.4 113 46.9
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 7.8e-23 113.2 220 87.7
COL.COLO4_28305 Corchorus olitorius HOM05D006106 ORTHO05D034875 5.0e-22 110.5 98 55.1
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.9e-21 108.6 90 50.0
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 9.5e-21 106.3 67 70.1
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 9.5e-21 106.3 84 57.1
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 4.7e-20 104.0 232 39.7
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 4.0e-19 100.9 86 57.0
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 4.0e-19 100.9 221 87.8
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 1.2e-15 89.4 76 48.7
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.5e-15 87.8 76 48.7
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 6.0e-15 87.0 73 47.9
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.9e-13 82.0 178 52.8
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 3.3e-13 81.3 72 43.1
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 7.3e-13 80.1 46 73.9
SEGI_09862 Sequoiadendron giganteum HOM05D006106 ORTHO05D007662 2.1e-12 78.6 82 45.1
Cc00_g34390 Coffea canephora HOM05D006106 ORTHO05D007662 3.6e-12 77.8 63 55.6
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 4.7e-12 77.4 46 76.1
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.0e-11 74.3 377 51.7
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 4.0e-11 74.3 46 69.6
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.0e-10 72.0 46 63.0
CSS0047930 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 9.2e-08 63.2 51 60.8
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 6.0e-07 60.5 89 34.8
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 6.0e-07 60.5 97 34.0
arahy.Tifrunner.gnm1.ann1.N3YXA0 Arachis hypogaea HOM05D006414 ORTHO05D007780 7.8e-07 60.1 124 29.0
arahy.Tifrunner.gnm1.ann1.S4ITMM Arachis hypogaea HOM05D006414 ORTHO05D007780 7.8e-07 60.1 124 29.0
Cpa.g.sc68.20 Carica papaya HOM05D006749 ORTHO05D008352 7.8e-07 60.1 87 35.6
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 1.3e-06 59.3 106 33.0
Thhalv10011131m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 1.3e-06 59.3 106 33.0
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.3e-06 59.3 38 71.1
Phvul.002G263600 Phaseolus vulgaris HOM05D006414 ORTHO05D007780 1.3e-06 59.3 96 30.2
Rhsim03G0025900 Rhododendron simsii HOM05D036651 ORTHO05D034875 1.3e-06 59.3 45 66.7
unitig_27.g25088 Utricularia gibba HOM05D006749 ORTHO05D008352 1.3e-06 59.3 103 31.1
FvH4_4g12030 Fragaria vesca HOM05D006414 ORTHO05D007780 2.3e-06 58.5 130 26.2
Rhsim03G0026600 Rhododendron simsii HOM05D006106 ORTHO05D007662 2.3e-06 58.5 83 44.6
Eucgr.L02634 Eucalyptus grandis HOM05D006414 ORTHO05D007780 3.0e-06 58.2 122 27.0
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 3.9e-06 57.8 97 32.0
Cc07_g15860 Coffea canephora HOM05D006414 ORTHO05D007780 5.1e-06 57.4 126 28.6
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 5.1e-06 57.4 38 63.2
MD03G1187700 Malus domestica HOM05D006414 ORTHO05D007780 5.1e-06 57.4 112 28.6
Thecc.01G110400 Theobroma cacao HOM05D006414 ORTHO05D007780 5.1e-06 57.4 91 33.0
Actinidia16042 Actinidia chinensis HOM05D006414 ORTHO05D007780 6.6e-06 57.0 134 24.6
CSS0011059 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 8.6e-06 56.6 85 31.8
CSS0026013 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 8.6e-06 56.6 85 31.8
CiPaw.04G093800 Carya illinoinensis HOM05D006414 ORTHO05D007780 8.6e-06 56.6 104 29.8
AUR62003321 Chenopodium quinoa HOM05D006414 ORTHO05D007780 8.6e-06 56.6 91 29.7
AUR62016261 Chenopodium quinoa HOM05D006414 ORTHO05D007780 8.6e-06 56.6 91 29.7
AUR62043752 Chenopodium quinoa HOM05D006414 ORTHO05D007780 8.6e-06 56.6 91 29.7


User provided reference genes

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