Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 8.1e-76 287.0 142 100.0
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.8e-38 162.9 85 92.9
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.5e-32 143.3 120 61.7
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 4.2e-32 141.7 120 60.8
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 6.1e-31 137.9 120 59.2
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 5.2e-30 134.8 127 54.3
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.2e-30 134.8 120 56.7
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.2e-30 134.8 120 56.7
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 8.8e-30 134.0 120 56.7
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 8.8e-30 134.0 120 56.7
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 2.6e-29 132.5 126 56.3
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 2.6e-29 132.5 120 57.5
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 3.3e-29 132.1 120 56.7
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.3e-29 132.1 120 56.7
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.3e-29 132.1 120 56.7
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.3e-29 132.1 120 56.7
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 7.5e-29 131.0 120 55.0
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 7.5e-29 131.0 85 69.4
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 9.7e-29 130.6 135 49.6
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.3e-28 130.2 123 56.1
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 1.7e-28 129.8 124 50.8
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.2e-28 129.4 135 49.6
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 2.8e-28 129.0 120 55.0
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 2.8e-28 129.0 120 54.2
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 4.8e-28 128.3 120 55.0
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 4.8e-28 128.3 85 68.2
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 4.8e-28 128.3 120 53.3
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 6.3e-28 127.9 120 54.2
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 6.3e-28 127.9 120 54.2
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 6.3e-28 127.9 120 54.2
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.1e-27 127.1 120 51.7
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 1.1e-27 127.1 120 54.2
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 1.1e-27 127.1 120 54.2
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.4e-27 126.7 120 54.2
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.4e-27 126.7 120 53.3
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.4e-27 126.7 120 52.5
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 2.4e-27 125.9 120 56.7
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 2.4e-27 125.9 120 55.0
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 3.1e-27 125.6 120 53.3
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 3.1e-27 125.6 116 56.9
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 4.1e-27 125.2 120 54.2
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 4.1e-27 125.2 120 54.2
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 5.3e-27 124.8 120 55.0
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 7.0e-27 124.4 120 54.2
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 7.0e-27 124.4 120 51.7
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 7.0e-27 124.4 109 58.7
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 9.1e-27 124.0 120 54.2
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 9.1e-27 124.0 109 56.0
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.2e-26 123.6 120 53.3
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 1.2e-26 123.6 120 52.5
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.2e-26 123.6 120 54.2
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.6e-26 123.2 120 53.3
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 1.6e-26 123.2 139 48.2
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.0e-26 122.9 120 53.3
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.7e-26 122.5 109 57.8
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 2.7e-26 122.5 109 57.8
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 3.5e-26 122.1 120 50.0
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 3.5e-26 122.1 85 67.1
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 4.5e-26 121.7 139 46.8
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 5.9e-26 121.3 120 50.8
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.9e-26 121.3 120 50.8
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 5.9e-26 121.3 120 54.2
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 5.9e-26 121.3 120 50.8
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 7.7e-26 120.9 136 45.6
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 1.0e-25 120.6 120 49.2
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.0e-25 120.6 85 65.9
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 1.7e-25 119.8 120 50.8
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.7e-25 119.8 120 50.8
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.7e-25 119.8 120 52.5
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.7e-25 119.8 120 51.7
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.7e-25 119.8 120 49.2
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.7e-25 119.8 113 55.8
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.2e-25 119.4 120 52.5
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 3.8e-25 118.6 85 64.7
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 3.8e-25 118.6 120 50.0
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 5.0e-25 118.2 120 51.7
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 5.0e-25 118.2 115 53.9
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 8.5e-25 117.5 136 46.3
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 8.5e-25 117.5 120 50.0
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.1e-24 117.1 120 50.0
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 1.1e-24 117.1 136 46.3
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.5e-24 116.7 120 49.2
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.9e-24 116.3 113 49.6
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 3.2e-24 115.5 120 50.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 3.2e-24 115.5 120 50.8
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 5.5e-24 114.8 136 45.6
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 7.2e-24 114.4 120 50.0
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 7.2e-24 114.4 114 49.1
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 7.2e-24 114.4 120 51.7
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 1.6e-23 113.2 130 46.9
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.6e-23 113.2 120 48.3
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 2.1e-23 112.8 120 47.5
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 2.1e-23 112.8 112 50.9
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 2.7e-23 112.5 124 47.6
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 4.7e-23 111.7 120 49.2
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 6.1e-23 111.3 138 47.8
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.0e-22 110.5 120 46.7
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.0e-22 110.5 85 60.0
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.4e-22 110.2 112 50.0
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 3.0e-22 109.0 120 46.7
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.0e-22 109.0 120 46.7
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.0e-22 108.6 116 47.4
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 3.4e-21 105.5 120 47.5
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 9.8e-21 104.0 120 47.5
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.3e-20 103.6 120 47.5
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.2e-20 102.8 66 75.8
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.8e-19 99.8 90 53.3
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 7.0e-19 97.8 98 53.1
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.2e-18 97.1 124 41.9
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 2.7e-18 95.9 98 49.0
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.9e-16 89.7 137 38.0
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 5.5e-16 88.2 117 41.0
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 2.3e-14 82.8 121 34.7
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 4.0e-14 82.0 126 38.1
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 5.2e-14 81.6 124 35.5
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 5.2e-14 81.6 91 48.4
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.7e-12 76.6 60 55.0
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 1.5e-08 63.5 116 30.2
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.2e-07 60.5 101 36.6
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 8.0e-07 57.8 27 88.9
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 8.0e-07 57.8 39 71.8


User provided reference genes

Program Settings