Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.5e-169 599.4 294 100.0
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 2.8e-78 296.2 283 53.7
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 9.9e-76 287.7 283 53.7
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 3.2e-74 282.7 287 50.2
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.2e-73 280.8 267 54.3
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 1.2e-73 280.8 285 50.9
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 2.7e-73 279.6 257 54.5
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 3.5e-73 279.3 270 52.2
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 6.0e-73 278.5 285 51.2
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 7.8e-73 278.1 256 53.1
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 7.8e-73 278.1 283 51.9
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 1.0e-72 277.7 281 50.5
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 5.1e-72 275.4 255 55.3
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 6.6e-72 275.0 292 47.9
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 8.6e-72 274.6 287 50.5
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.1e-71 274.2 261 54.0
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.5e-71 273.9 258 52.7
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.5e-71 273.1 281 49.8
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.3e-71 272.3 232 56.0
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 4.3e-71 272.3 288 49.7
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 5.6e-71 271.9 283 50.5
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 7.3e-71 271.6 280 49.3
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 9.6e-71 271.2 258 52.7
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.6e-71 271.2 278 51.1
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 9.6e-71 271.2 231 57.1
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.6e-70 270.4 257 52.5
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.6e-70 270.4 298 47.7
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 1.6e-70 270.4 258 52.7
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.6e-70 270.4 228 58.3
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 2.1e-70 270.0 270 52.2
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.8e-70 269.6 248 54.4
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.8e-70 269.6 281 50.2
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 3.6e-70 269.2 248 54.4
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 3.6e-70 269.2 270 48.9
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 3.6e-70 269.2 231 56.3
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 3.6e-70 269.2 278 50.4
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 4.7e-70 268.9 249 52.2
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 4.7e-70 268.9 301 49.2
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 6.2e-70 268.5 298 47.7
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 8.1e-70 268.1 254 53.1
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.1e-69 267.7 231 55.4
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.4e-69 267.3 231 55.8
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.4e-69 266.5 233 56.2
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 2.4e-69 266.5 255 52.2
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 5.2e-69 265.4 299 48.2
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 5.2e-69 265.4 299 48.2
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 5.2e-69 265.4 284 49.3
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 5.2e-69 265.4 231 55.4
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 6.9e-69 265.0 232 56.5
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 8.9e-69 264.6 230 56.5
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.2e-68 264.2 231 55.4
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.2e-68 264.2 247 52.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.5e-68 263.8 259 51.7
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 2.0e-68 263.5 230 56.1
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 2.6e-68 263.1 255 52.2
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.6e-68 263.1 255 51.8
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 3.4e-68 262.7 304 47.7
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 7.6e-68 261.5 255 51.8
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 7.6e-68 261.5 259 51.7
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 9.9e-68 261.2 298 47.0
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.3e-67 260.8 289 48.1
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.3e-67 260.8 259 50.2
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.7e-67 260.4 253 52.6
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 2.2e-67 260.0 230 54.8
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 2.9e-67 259.6 231 54.5
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 3.8e-67 259.2 230 56.1
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 6.4e-67 258.5 255 51.4
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 6.4e-67 258.5 245 51.8
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 6.4e-67 258.5 231 53.7
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.4e-66 257.3 244 52.5
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 3.2e-66 256.1 232 54.3
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.2e-66 256.1 248 52.4
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 3.2e-66 256.1 234 52.6
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 5.4e-66 255.4 228 51.8
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 7.1e-66 255.0 245 49.8
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 9.3e-66 254.6 249 51.0
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 9.3e-66 254.6 230 53.5
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.2e-65 254.2 245 49.8
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 1.2e-65 254.2 228 53.5
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 2.1e-65 253.4 245 49.4
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.1e-65 253.4 245 49.8
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 2.7e-65 253.1 246 51.2
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 4.6e-65 252.3 245 49.4
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 6.0e-65 251.9 249 48.6
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 6.0e-65 251.9 232 53.4
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 7.8e-65 251.5 245 48.6
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 2.3e-64 250.0 245 49.0
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 2.3e-64 250.0 242 49.2
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 2.3e-64 250.0 245 49.0
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 2.3e-64 250.0 245 49.0
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.3e-64 250.0 254 50.0
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 2.3e-64 250.0 245 49.0
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 2.3e-64 250.0 231 52.8
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 3.9e-64 249.2 231 51.9
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.9e-64 249.2 286 46.2
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 3.9e-64 249.2 228 55.3
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.1e-63 247.7 261 46.0
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.5e-63 247.3 281 47.0
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 2.5e-63 246.5 221 52.5
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 2.5e-63 246.5 249 47.4
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 4.3e-63 245.7 275 48.0
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 4.3e-63 245.7 224 53.6
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 9.6e-63 244.6 225 51.1
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.6e-62 243.8 264 48.1
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.1e-61 241.1 248 50.8
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.0e-61 239.2 230 53.0
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 7.6e-60 235.0 296 42.9
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 7.6e-60 235.0 341 40.2
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 9.9e-60 234.6 228 52.2
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.9e-59 233.0 207 57.0
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.9e-58 230.3 243 50.2
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.9e-58 230.3 230 49.6
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.7e-57 226.5 261 44.8
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 4.6e-57 225.7 258 45.0
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.3e-56 223.4 298 43.0
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.9e-56 222.6 203 53.7
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 5.1e-56 222.2 236 45.3
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.9e-55 220.3 225 47.6
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.4e-53 213.4 215 49.3
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 5.3e-53 212.2 212 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 6.9e-53 211.8 231 45.9
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.1e-50 204.5 263 43.0
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 3.2e-50 203.0 221 50.7
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 5.6e-47 192.2 221 44.3
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 3.8e-43 179.5 223 41.3
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 3.8e-43 179.5 223 41.3
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 2.5e-42 176.8 220 38.2
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 4.2e-42 176.0 230 40.0
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.2e-41 174.5 137 60.6
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.1e-39 167.9 133 57.1
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.5e-39 167.5 136 57.4
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 3.6e-33 146.4 218 39.4
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.7e-32 142.1 235 35.7
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.5e-31 141.0 235 35.3
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.5e-31 141.0 110 59.1
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 5.7e-31 139.0 137 50.4
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 7.4e-31 138.7 233 36.1
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-30 137.9 387 26.6
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 3.1e-29 133.3 139 48.2
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.1e-24 115.9 96 58.3
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.8e-24 115.2 96 59.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 1.7e-22 110.9 109 45.9
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 3.7e-22 109.8 115 47.8
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 5.5e-18 95.9 123 43.1
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 4.7e-17 92.8 92 50.0
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 9.7e-15 85.1 82 47.6
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.1e-13 81.6 98 48.0
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.1e-10 71.6 81 43.2
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 2.5e-10 70.5 68 47.1


User provided reference genes

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