Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.1e-278 962.6 484 100.0
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 6.9e-252 873.6 579 79.3
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 8.7e-170 600.9 614 56.0
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 2.5e-169 599.4 616 57.1
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 2.8e-168 595.9 615 55.1
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.6e-168 595.5 633 56.2
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 4.0e-167 592.0 613 55.0
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 9.0e-167 590.9 613 54.8
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.5e-166 590.1 649 53.5
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 9.9e-166 587.4 639 53.1
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 1.7e-165 586.6 634 53.9
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.9e-165 585.9 611 55.2
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 3.8e-165 585.5 627 52.8
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 8.4e-165 584.3 628 54.3
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.4e-164 582.8 618 54.7
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.2e-164 582.4 615 53.7
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 3.2e-164 582.4 623 52.8
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 4.2e-164 582.0 618 54.2
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 2.1e-163 579.7 615 53.7
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 7.9e-163 577.8 635 54.0
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 7.9e-163 577.8 635 54.0
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.3e-162 577.0 619 54.6
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 8.7e-162 574.3 638 52.4
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 1.1e-161 573.9 615 54.8
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.1e-161 573.9 613 54.2
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.9e-161 573.2 621 53.5
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 2.5e-161 572.8 633 53.6
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 2.5e-161 572.8 629 53.3
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.5e-161 572.8 613 53.0
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 2.5e-161 572.8 621 53.9
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 7.4e-161 571.2 624 53.8
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 9.6e-161 570.9 613 54.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 2.1e-160 569.7 641 51.8
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.2e-160 568.2 617 54.0
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.4e-159 567.0 648 51.2
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 5.3e-159 565.1 625 53.0
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.9e-159 564.7 612 53.6
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.5e-158 563.5 639 51.6
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 1.5e-158 563.5 615 53.5
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 3.4e-158 562.4 625 52.8
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 5.8e-158 561.6 632 53.0
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 9.9e-158 560.8 642 51.6
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.2e-157 559.7 615 53.3
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 2.2e-157 559.7 627 51.8
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 2.9e-157 559.3 621 52.5
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 3.8e-157 558.9 575 56.3
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 8.4e-157 557.8 633 51.8
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.4e-156 556.2 620 53.1
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 2.4e-156 556.2 646 51.7
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 5.5e-156 555.1 615 52.2
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 5.5e-156 555.1 612 52.5
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 1.2e-155 553.9 655 49.8
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.1e-155 553.1 615 53.3
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 2.1e-155 553.1 652 50.3
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 2.1e-155 553.1 622 50.8
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 4.6e-155 552.0 627 51.7
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 4.6e-155 552.0 614 52.0
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 6.0e-155 551.6 616 51.9
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 6.0e-155 551.6 612 52.9
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 6.0e-155 551.6 632 52.7
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 1.3e-154 550.4 614 53.4
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 3.0e-154 549.3 612 53.3
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 3.1e-151 539.3 576 53.5
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 9.0e-151 537.7 608 51.6
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 1.2e-150 537.3 617 49.6
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.5e-150 537.0 523 57.4
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 1.5e-150 537.0 631 50.4
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 2.0e-150 536.6 611 52.4
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 2.0e-150 536.6 639 51.0
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 3.4e-150 535.8 630 50.6
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 7.6e-150 534.6 614 51.1
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 7.6e-150 534.6 615 50.2
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 7.6e-150 534.6 626 50.0
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 7.6e-150 534.6 619 50.7
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.0e-149 534.3 604 51.8
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 1.0e-149 534.3 615 51.5
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 1.7e-149 533.5 749 46.2
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 2.2e-149 533.1 624 51.1
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 3.8e-149 532.3 604 51.8
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 3.8e-149 532.3 635 50.9
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 8.4e-149 531.2 649 49.6
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 1.9e-148 530.0 604 51.5
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.9e-148 530.0 616 50.5
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 7.1e-148 528.1 610 50.8
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 1.2e-147 527.3 505 57.2
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 2.1e-147 526.6 609 50.6
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.0e-146 524.2 608 50.3
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.0e-146 524.2 603 51.2
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.0e-146 524.2 603 51.2
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 1.0e-146 524.2 652 48.5
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 3.0e-146 522.7 611 49.4
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 3.9e-146 522.3 640 48.8
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.7e-145 518.5 618 51.1
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 7.4e-145 518.1 641 49.3
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 9.7e-145 517.7 616 50.2
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.8e-144 515.4 618 51.1
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 6.3e-144 515.0 637 48.4
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 2.4e-143 513.1 605 50.1
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 6.9e-143 511.5 618 50.2
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 1.0e-141 507.7 608 48.4
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 2.9e-141 506.1 620 50.3
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 8.5e-141 504.6 648 47.4
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 3.2e-140 502.7 618 49.5
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 3.2e-140 502.7 571 50.3
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.6e-139 500.4 490 56.1
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 9.7e-137 491.1 663 46.0
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 8.2e-136 488.0 628 47.9
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 9.1e-135 484.6 560 51.4
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.0e-134 483.4 618 49.2
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 2.6e-134 483.0 305 77.0
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 7.2e-132 474.9 586 49.5
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.3e-130 469.9 613 48.0
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 2.0e-129 466.8 302 73.5
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.3e-128 464.2 616 45.9
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.1e-127 461.1 291 75.3
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 1.4e-127 460.7 655 43.8
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 1.5e-126 457.2 303 73.9
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 2.6e-126 456.4 291 74.9
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 2.6e-126 456.4 291 74.9
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.9e-125 453.0 299 74.2
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 4.2e-124 449.1 298 72.8
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.1e-123 446.8 294 74.8
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 3.0e-122 443.0 546 50.2
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 6.7e-122 441.8 289 73.0
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.1e-121 441.0 648 42.0
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 2.6e-121 439.9 476 51.7
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 2.6e-121 439.9 299 71.6
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 7.4e-121 438.3 641 41.3
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 2.0e-113 413.7 677 40.3
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 3.5e-110 402.9 629 43.2
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 4.0e-106 389.4 254 72.0
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 4.0e-106 389.4 254 72.0
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 4.4e-97 359.4 554 39.9
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 4.4e-89 332.8 236 70.8
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.3e-53 214.2 307 39.7
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.4e-47 194.1 108 86.1
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 3.9e-29 133.7 165 52.7
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 5.1e-29 133.3 197 47.7
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 2.5e-28 131.0 206 42.2
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.5e-25 121.7 87 66.7
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 4.5e-25 120.2 193 44.6
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.7e-19 101.7 244 32.0
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.1e-18 97.1 161 44.7
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 1.2e-14 85.5 154 42.9
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.4e-13 82.0 95 46.3
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.1e-12 79.0 134 45.5
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 3.5e-09 67.4 138 39.9
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 6.5e-08 63.2 116 41.4
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 8.5e-08 62.8 63 50.8
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 6.1e-06 56.6 149 35.6


User provided reference genes

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