Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 6.3e-166 587.4 306 100.0
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.9e-61 240.4 328 49.4
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 8.7e-59 231.5 331 48.9
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.7e-57 226.1 344 47.4
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 6.3e-57 225.3 330 47.3
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.1e-56 222.6 351 46.4
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 9.4e-53 211.5 325 48.6
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.2e-52 211.1 286 49.0
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.1e-52 208.8 342 45.3
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 1.8e-51 207.2 378 41.3
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 2.3e-51 206.8 330 46.1
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.3e-51 206.8 363 40.8
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 3.0e-51 206.5 345 46.1
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 6.7e-51 205.3 341 46.3
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 6.7e-51 205.3 340 45.0
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 6.7e-51 205.3 340 45.0
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 1.1e-50 204.5 329 45.9
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 1.1e-50 204.5 329 43.8
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.5e-50 204.1 342 45.3
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 4.3e-50 202.6 351 43.0
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.7e-49 200.7 361 43.2
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 3.7e-49 199.5 353 43.6
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 4.8e-49 199.1 323 44.6
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 6.3e-49 198.7 383 40.5
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 6.3e-49 198.7 406 39.7
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 8.2e-49 198.4 370 42.4
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 8.2e-49 198.4 372 40.6
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.1e-48 198.0 322 44.1
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.4e-48 197.6 320 46.6
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 2.4e-48 196.8 326 43.6
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 3.1e-48 196.4 408 39.5
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.1e-48 196.1 340 45.3
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 4.1e-48 196.1 379 40.9
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 5.3e-48 195.7 375 40.8
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 6.9e-48 195.3 370 40.0
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.5e-47 194.1 342 44.2
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.5e-47 194.1 354 42.7
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 1.5e-47 194.1 370 41.9
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 3.4e-47 193.0 402 39.8
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 5.9e-47 192.2 302 45.7
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.9e-47 192.2 368 40.5
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.7e-47 191.8 367 41.7
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 1.3e-46 191.0 322 44.4
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.7e-46 190.7 356 41.3
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.7e-46 190.7 387 38.5
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 5.0e-46 189.1 353 41.9
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 6.5e-46 188.7 389 38.6
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.4e-45 187.6 322 43.5
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 1.9e-45 187.2 312 44.6
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 2.5e-45 186.8 347 42.4
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.2e-45 186.4 372 40.9
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.2e-45 186.0 332 43.4
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 4.2e-45 186.0 364 39.6
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 9.4e-45 184.9 434 36.4
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 9.4e-45 184.9 322 42.9
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.2e-44 184.5 359 39.6
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.6e-44 184.1 351 44.2
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.1e-44 183.7 347 42.1
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.1e-44 183.7 357 40.6
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 2.1e-44 183.7 368 38.0
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 3.6e-44 183.0 337 41.5
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 4.7e-44 182.6 381 39.4
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 4.7e-44 182.6 377 39.0
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 6.1e-44 182.2 339 43.4
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 6.1e-44 182.2 401 37.4
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 7.9e-44 181.8 354 39.3
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 7.9e-44 181.8 370 39.2
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 7.9e-44 181.8 340 41.8
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 7.9e-44 181.8 352 38.6
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.0e-43 181.4 341 40.2
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.4e-43 181.0 284 46.1
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 3.0e-43 179.9 370 39.2
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.9e-43 179.5 362 41.2
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 3.9e-43 179.5 332 41.9
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 5.1e-43 179.1 355 40.8
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 6.7e-43 178.7 348 40.5
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 6.7e-43 178.7 379 39.3
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 8.8e-43 178.3 356 39.9
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.1e-42 177.9 341 41.3
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 1.1e-42 177.9 345 42.9
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.1e-42 177.9 378 37.8
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.5e-42 177.6 319 43.9
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 1.5e-42 177.6 353 39.7
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 2.6e-42 176.8 388 37.4
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.6e-42 176.8 336 42.6
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 4.4e-42 176.0 343 39.9
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 4.4e-42 176.0 358 41.3
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 4.4e-42 176.0 363 41.9
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 5.7e-42 175.6 363 39.9
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 7.4e-42 175.3 358 39.7
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 7.4e-42 175.3 311 44.7
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.3e-41 174.5 355 41.1
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 2.8e-41 173.3 357 39.8
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 8.2e-41 171.8 399 37.3
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 8.2e-41 171.8 372 38.4
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.8e-40 170.6 342 40.9
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 2.4e-40 170.2 363 40.2
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 4.1e-40 169.5 342 40.6
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 9.1e-40 168.3 369 39.0
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 4.5e-39 166.0 369 37.1
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 5.9e-39 165.6 350 38.3
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 5.9e-39 165.6 391 35.5
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 5.9e-39 165.6 372 36.6
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 5.9e-39 165.6 367 37.9
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.3e-38 164.5 364 38.2
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.7e-38 164.1 336 39.6
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.8e-38 162.9 356 39.9
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 6.5e-38 162.2 345 40.9
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 6.5e-38 162.2 345 40.9
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 6.5e-38 162.2 345 40.9
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 8.5e-38 161.8 383 37.1
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 1.5e-37 161.0 389 37.5
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.9e-37 160.6 376 37.8
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.9e-37 160.6 353 39.7
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.5e-37 160.2 350 40.6
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.5e-37 160.2 363 38.6
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 3.2e-37 159.8 311 41.2
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 4.2e-37 159.5 312 41.0
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 5.5e-37 159.1 367 36.5
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 5.5e-37 159.1 349 39.5
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 9.4e-37 158.3 384 38.0
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.1e-36 157.1 310 39.0
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 2.1e-36 157.1 350 38.9
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.1e-36 157.1 373 36.5
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 2.1e-36 157.1 332 40.1
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.0e-35 154.8 370 36.5
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 3.9e-35 152.9 319 38.2
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 6.7e-35 152.1 348 37.9
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 6.7e-35 152.1 366 37.4
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-34 151.0 323 38.4
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.6e-34 150.2 343 39.9
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 5.7e-34 149.1 357 37.5
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 7.4e-34 148.7 362 37.8
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 7.4e-34 148.7 371 35.6
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 3.7e-33 146.4 373 35.4
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 3.7e-33 146.4 375 34.4
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 3.7e-33 146.4 349 36.4
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 6.3e-33 145.6 359 35.1
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.8e-32 144.1 151 56.3
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 4.1e-32 142.9 342 35.7
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 5.3e-32 142.5 310 38.4
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.6e-31 141.0 369 36.3
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.7e-30 137.5 276 37.7
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 2.2e-30 137.1 312 37.5
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 6.5e-30 135.6 291 39.9
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 6.5e-30 135.6 291 39.9
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 6.5e-30 135.6 291 39.9
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 7.2e-29 132.1 150 53.3
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 8.0e-28 128.6 313 35.1
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.3e-25 121.3 362 32.6
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.7e-23 113.6 405 31.6
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.7e-22 110.9 332 37.0
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.6e-20 104.4 110 55.5
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 4.7e-20 102.8 283 33.9
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.6e-15 87.8 109 50.5
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 5.0e-14 82.8 369 27.9
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.1e-13 81.6 113 46.0
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 5.5e-13 79.3 122 44.3
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 1.6e-12 77.8 359 31.2
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 2.1e-12 77.4 67 53.7
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 2.3e-11 73.9 110 46.4
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 5.2e-11 72.8 72 56.9
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 5.2e-11 72.8 112 46.4
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 9.8e-10 68.6 164 37.2
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.8e-08 64.3 118 44.1
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 7.0e-08 62.4 111 40.5
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.0e-07 60.8 73 57.5


User provided reference genes

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