Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.4e-212 742.7 366 100.0
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.8e-175 619.4 349 88.8
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.2e-84 316.2 382 45.3
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 4.2e-76 289.3 369 41.5
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 2.1e-75 287.0 378 43.4
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.7e-75 286.6 373 42.6
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 8.8e-74 281.6 372 39.5
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.2e-73 281.2 373 39.4
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 7.5e-73 278.5 374 40.4
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 9.7e-73 278.1 372 40.3
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.3e-72 277.7 372 40.9
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 2.8e-72 276.6 374 40.4
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.8e-71 273.9 372 39.2
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 2.0e-70 270.4 369 37.4
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 2.7e-70 270.0 372 39.5
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 3.5e-70 269.6 385 39.2
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 4.5e-70 269.2 369 39.0
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 7.7e-70 268.5 375 38.4
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 1.0e-69 268.1 375 40.5
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 1.7e-69 267.3 373 39.1
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 2.9e-69 266.5 373 40.2
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 2.9e-69 266.5 369 37.9
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.5e-68 264.2 380 39.7
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 3.2e-68 263.1 378 38.4
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.2e-67 261.2 376 40.7
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 2.3e-66 256.9 396 38.1
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 9.8e-65 251.5 375 37.1
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 3.1e-63 246.5 378 37.3
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 9.1e-63 245.0 375 38.1
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 1.2e-62 244.6 373 38.1
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.6e-62 244.2 376 36.7
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 2.0e-62 243.8 375 38.9
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.7e-62 243.4 372 35.8
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 3.5e-62 243.0 376 37.0
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 5.9e-62 242.3 375 37.9
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 5.9e-62 242.3 373 38.1
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 5.9e-62 242.3 376 37.2
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 1.0e-61 241.5 377 35.8
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.7e-61 240.7 373 35.9
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.7e-61 240.7 372 36.3
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.9e-61 240.0 378 36.0
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 2.9e-61 240.0 375 35.5
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.9e-61 240.0 383 38.4
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.9e-61 240.0 372 36.0
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 3.8e-61 239.6 365 36.7
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 5.0e-61 239.2 373 36.2
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 6.5e-61 238.8 373 35.4
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.1e-60 238.0 384 37.0
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 2.5e-60 236.9 376 37.0
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 2.5e-60 236.9 383 38.1
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 2.5e-60 236.9 375 38.1
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.2e-60 236.5 381 38.1
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 4.2e-60 236.1 378 36.2
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 4.2e-60 236.1 373 36.7
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 7.2e-60 235.3 376 37.2
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 2.1e-59 233.8 378 35.2
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 2.1e-59 233.8 380 37.6
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 2.1e-59 233.8 374 35.0
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.1e-59 233.8 372 35.8
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.6e-59 233.0 376 37.0
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 4.7e-59 232.6 373 37.0
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 8.0e-59 231.9 380 35.8
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.0e-58 231.5 369 37.4
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 1.4e-58 231.1 373 33.5
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 1.4e-58 231.1 376 35.1
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.8e-58 230.7 377 36.1
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.8e-58 230.7 373 34.9
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.3e-58 230.3 372 36.8
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 4.0e-58 229.6 374 35.3
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 4.0e-58 229.6 394 36.8
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 6.8e-58 228.8 388 35.6
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 6.8e-58 228.8 374 37.4
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.8e-58 228.4 382 38.7
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 8.8e-58 228.4 372 34.7
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.2e-57 228.0 374 35.0
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.5e-57 227.6 376 34.6
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 2.6e-57 226.9 375 34.1
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 3.4e-57 226.5 375 36.0
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 3.4e-57 226.5 368 35.3
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 3.4e-57 226.5 373 34.0
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 9.8e-57 224.9 377 34.0
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.3e-56 224.6 374 35.3
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 1.7e-56 224.2 379 33.8
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.8e-56 223.4 369 34.7
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 4.9e-56 222.6 372 35.8
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 4.9e-56 222.6 385 36.4
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.9e-56 222.6 394 35.5
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 4.9e-56 222.6 372 35.5
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 6.3e-56 222.2 372 33.1
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 1.1e-55 221.5 413 35.4
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.4e-55 221.1 368 36.1
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.4e-55 221.1 369 33.9
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.8e-55 220.7 369 35.2
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.4e-55 220.3 369 34.1
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 2.4e-55 220.3 369 34.1
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 9.2e-55 218.4 373 34.6
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.2e-54 218.0 373 34.6
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 2.7e-54 216.9 410 34.6
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 1.0e-53 214.9 371 33.2
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.7e-53 214.2 373 34.0
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.9e-53 213.4 374 34.5
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.8e-51 206.8 377 36.1
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 4.7e-51 206.1 372 35.2
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 3.0e-50 203.4 371 32.3
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 4.0e-50 203.0 330 36.1
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 1.5e-49 201.1 371 33.7
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.1e-47 194.9 359 35.1
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 2.4e-47 193.7 364 33.0
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 3.0e-45 186.8 371 32.3
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 1.9e-44 184.1 362 32.6
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 1.9e-44 184.1 373 30.8
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 2.7e-38 163.7 373 31.9
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.0e-37 161.8 315 33.7
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.2e-35 154.8 413 27.6
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 2.8e-35 153.7 157 52.9
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.4e-34 151.4 207 37.7
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 6.4e-32 142.5 402 26.6
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.9e-31 141.0 234 40.2
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 4.1e-31 139.8 422 25.8
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.0e-29 133.7 468 25.4
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 4.7e-27 126.3 282 35.1
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 1.1e-26 125.2 191 36.1
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.4e-26 124.8 418 23.9
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.5e-25 121.3 413 25.7
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.0e-25 120.9 132 51.5
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 9.9e-25 118.6 373 24.1
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 6.4e-24 115.9 336 26.5
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.3e-21 108.2 106 39.6
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 7.3e-20 102.4 111 36.9
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.4e-15 87.4 216 29.2
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-15 86.7 445 23.1
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 3.0e-13 80.5 78 47.4
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 3.8e-08 63.5 63 34.9


User provided reference genes

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