Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2668.6 1347 100.0
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1384 87.6
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2404.0 1385 86.9
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2400.9 1385 86.5
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2393.6 1385 86.4
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2393.2 1386 86.1
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2391.3 1392 86.2
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2389.8 1384 86.2
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2389.4 1383 86.3
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2388.6 1384 86.3
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2386.7 1384 85.9
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2386.3 1383 85.8
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2383.6 1383 86.3
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2382.8 1384 85.8
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2382.1 1384 86.0
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2377.4 1383 86.1
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2376.7 1384 85.8
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2376.3 1384 85.9
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2375.9 1383 85.2
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2375.1 1384 85.7
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2374.4 1388 85.6
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2374.4 1384 85.7
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2374.0 1381 85.6
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2370.9 1388 85.5
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2369.0 1398 84.8
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2367.8 1384 85.2
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2367.0 1385 85.2
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2366.7 1384 85.3
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2366.3 1383 85.3
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2365.9 1384 85.1
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2365.1 1382 86.0
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2364.7 1384 84.7
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2364.3 1384 85.2
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2362.8 1386 84.9
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2360.5 1383 84.4
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2359.7 1386 84.8
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2357.8 1383 85.0
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2357.0 1383 84.7
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2355.1 1385 84.6
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2353.9 1399 84.6
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2352.0 1382 84.4
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2350.9 1383 84.3
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2350.1 1384 84.8
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2348.9 1371 85.8
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2348.5 1383 84.5
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2346.2 1383 84.3
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2346.2 1383 84.5
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2344.7 1384 84.5
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2344.7 1384 84.2
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2344.3 1385 84.5
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2343.9 1381 84.6
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2342.0 1382 84.2
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2338.1 1384 83.9
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2338.1 1383 84.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2336.2 1383 84.1
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2333.9 1383 83.8
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2333.1 1384 84.1
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2331.2 1383 83.6
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2330.1 1384 84.0
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2325.8 1386 83.4
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2325.4 1383 83.7
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2324.3 1383 83.5
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2324.3 1383 83.7
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2323.9 1382 83.6
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2322.7 1382 83.5
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2322.4 1385 83.2
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2321.6 1383 83.6
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2321.6 1383 83.6
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2318.9 1385 83.4
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2317.7 1385 83.3
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2317.7 1383 83.9
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2313.1 1383 83.7
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2310.8 1410 82.1
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2308.1 1382 83.1
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2304.6 1383 83.9
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2303.1 1336 85.4
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2297.7 1446 79.9
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2294.2 1355 84.2
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2290.8 1384 82.3
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2289.2 1383 82.4
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2286.1 1384 82.3
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2285.8 1384 82.3
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2284.2 1383 82.0
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2281.9 1383 83.2
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2280.4 1384 82.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2280.0 1383 82.6
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2279.2 1380 83.0
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2277.7 1384 81.9
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2273.8 1385 82.7
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2271.9 1386 81.9
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2271.9 1386 81.9
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2269.2 1384 81.9
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2269.2 1384 81.9
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2267.7 1384 81.8
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2265.7 1338 83.6
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2233.8 1378 81.1
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2222.6 1330 82.0
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2181.8 1383 79.6
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2154.4 1259 85.4
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2140.9 1331 78.7
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2138.6 1259 85.1
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2135.5 1333 78.6
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2123.2 1334 78.0
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2115.1 1268 83.8
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2103.2 1331 77.6
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2103.2 1331 77.6
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2095.1 1367 74.8
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2092.8 1347 78.8
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1932.5 1350 74.3
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1873.6 1370 72.9
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1852.8 1120 82.3
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1830.8 1108 82.3
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1823.9 1333 67.9
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1803.5 1334 67.0
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1588.5 913 86.4
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1587.8 914 85.6
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1518.4 896 84.4
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1413.3 809 87.0
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1412.1 808 86.8
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1142.1 678 84.4
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 6.8e-297 1024.6 676 76.5
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 3.2e-278 962.6 670 74.5
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.8e-273 946.8 571 82.1
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 7.5e-272 941.4 1168 45.5
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.8e-236 823.9 588 72.3
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.7e-231 807.4 471 85.4
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 2.1e-229 800.4 471 84.9
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 7.4e-227 792.0 471 84.3
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 2.1e-221 773.9 398 96.7
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 8.8e-212 741.9 470 80.0
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 8.3e-162 575.9 1387 31.5
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.1e-144 518.1 1465 29.1
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 6.5e-98 363.6 892 30.9
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 5.0e-90 337.4 175 94.3
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 2.7e-67 261.9 147 84.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.4e-60 239.6 123 93.5
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 8.3e-45 187.2 107 86.9
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.0e-42 180.3 174 57.5
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 9.2e-28 130.6 99 68.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.2e-27 130.2 91 73.6
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.3e-18 100.1 60 83.3
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 2.8e-16 92.4 139 40.3


User provided reference genes

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