Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1211 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 0.0e+00 1227.2 631 100.0
CDE05G1926 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 4.9e-290 1000.7 706 78.2
Nn1g03583 Nelumbo nucifera HOM05D003428 ORTHO05D004131 3.3e-238 828.6 685 66.6
Dinv20034 Davidia involucrata HOM05D003428 ORTHO05D004131 2.4e-236 822.4 709 64.9
Aqoxy7G03064 Aquilegia oxysepala HOM05D003428 ORTHO05D004131 5.9e-235 817.8 708 65.1
Thecc.06G217400 Theobroma cacao HOM05D003428 ORTHO05D004131 3.2e-233 812.0 715 63.6
ATR0752G216 Amborella trichopoda HOM05D003428 ORTHO05D004131 5.5e-233 811.2 714 64.8
Eucgr.E04091 Eucalyptus grandis HOM05D003428 ORTHO05D004131 4.7e-232 808.1 728 62.8
Duzib235G0114 Durio zibethinus HOM05D003428 ORTHO05D004131 1.8e-231 806.2 715 63.4
Gorai.010G179100 Gossypium raimondii HOM05D003428 ORTHO05D004131 2.3e-231 805.8 715 62.9
QL05p074042 Quercus lobata HOM05D003428 ORTHO05D004131 5.2e-231 804.7 703 64.4
CiPaw.10G069400 Carya illinoinensis HOM05D003428 ORTHO05D004131 5.7e-230 801.2 709 62.9
Zm00001eb322860 Zea mays HOM05D003428 ORTHO05D004131 9.7e-230 800.4 708 62.6
Dinv13872 Davidia involucrata HOM05D003428 ORTHO05D004131 2.2e-229 799.3 710 63.7
Potri.004G018700 Populus trichocarpa HOM05D003428 ORTHO05D004131 2.2e-229 799.3 714 62.6
MBI02_g28339_MAGBIO Magnolia biondii HOM05D003428 ORTHO05D004131 6.3e-229 797.7 704 63.9
Manes.16G010100 Manihot esculenta HOM05D003428 ORTHO05D004131 6.3e-229 797.7 709 63.5
Prupe.4G024000 Prunus persica HOM05D003428 ORTHO05D004131 6.3e-229 797.7 709 63.8
TAR624G0497 Trochodendron aralioides HOM05D003428 ORTHO05D004131 1.8e-228 796.2 741 61.4
CiPaw.09G089300 Carya illinoinensis HOM05D003428 ORTHO05D004131 4.1e-228 795.0 705 63.0
Os07g0520900 Oryza sativa ssp. japonica HOM05D003428 ORTHO05D004131 4.1e-228 795.0 725 61.7
Gorai.009G177000 Gossypium raimondii HOM05D003428 ORTHO05D004131 2.0e-227 792.7 716 61.6
ClCG03G004880 Citrullus lanatus HOM05D003428 ORTHO05D004131 3.5e-227 792.0 715 62.7
PGR042G0159 Punica granatum HOM05D003428 ORTHO05D004131 3.5e-227 792.0 722 61.8
Glyma.07G259000 Glycine max HOM05D003428 ORTHO05D004131 5.9e-227 791.2 708 62.4
Glyma.17G015200 Glycine max HOM05D003428 ORTHO05D004131 1.0e-226 790.4 708 62.6
Cc09_g01930 Coffea canephora HOM05D003428 ORTHO05D004131 1.3e-226 790.0 708 62.4
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.7e-226 789.6 714 62.3
MD10G1317800 Malus domestica HOM05D003428 ORTHO05D004131 2.2e-226 789.3 706 63.6
Gohir.D05G171900 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.9e-226 788.9 714 61.5
MD05G1342900 Malus domestica HOM05D003428 ORTHO05D004131 1.9e-225 786.2 704 63.5
MELO3C002470.2 Cucumis melo HOM05D003428 ORTHO05D004131 2.5e-225 785.8 738 61.0
Gohir.A06G147300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.5e-225 785.8 715 62.0
RcHm_v2.0_Chr5g0003711 Rosa chinensis HOM05D003428 ORTHO05D004131 5.5e-225 784.6 709 62.6
Potri.011G000200 Populus trichocarpa HOM05D003428 ORTHO05D004131 2.1e-224 782.7 734 60.1
HanXRQChr05g0129871 Helianthus annuus HOM05D003428 ORTHO05D004131 1.0e-223 780.4 708 62.4
FvH4_3g02460 Fragaria vesca HOM05D003428 ORTHO05D004131 1.8e-223 779.6 709 62.3
Rhsim02G0110400 Rhododendron simsii HOM05D003428 ORTHO05D004131 1.5e-222 776.5 712 62.8
Lj4g0005527 Lotus japonicus HOM05D003428 ORTHO05D004131 2.6e-222 775.8 707 61.2
BcaB07g31289 Brassica carinata HOM05D003428 ORTHO05D004131 3.3e-222 775.4 709 60.6
A09p16630 Brassica napus HOM05D003428 ORTHO05D004131 5.7e-222 774.6 709 60.6
FAN25G3463 Fragaria x ananassa HOM05D003428 ORTHO05D004131 5.7e-222 774.6 709 62.2
BcaC04g22357 Brassica carinata HOM05D003428 ORTHO05D004131 7.5e-222 774.2 709 60.5
C09p20200 Brassica napus HOM05D003428 ORTHO05D004131 7.5e-222 774.2 709 60.5
BraA09t37300Z Brassica rapa HOM05D003428 ORTHO05D004131 1.3e-221 773.5 709 60.5
CARHR050470 Cardamine hirsuta HOM05D003428 ORTHO05D004131 1.3e-221 773.5 714 60.4
BolC9t54926H Brassica oleracea HOM05D003428 ORTHO05D004131 2.2e-221 772.7 711 60.3
TPR.G37012 Trifolium pratense HOM05D003428 ORTHO05D004131 2.8e-221 772.3 707 60.7
Lalb_Chr15g0087431 Lupinus albus HOM05D003428 ORTHO05D004131 6.3e-221 771.2 706 61.5
Nitab4.5_0010096g0010 Nicotiana tabacum HOM05D003428 ORTHO05D004131 1.1e-220 770.4 721 60.3
Thhalv10023219m.g Eutrema salsugineum HOM05D003428 ORTHO05D004131 1.4e-220 770.0 709 60.4
GSVIVG01012655001 Vitis vinifera HOM05D003428 ORTHO05D004131 1.4e-220 770.0 706 62.5
CAN.G569.22 Capsicum annuum HOM05D003428 ORTHO05D004131 5.3e-220 768.1 709 61.1
Cfa000250 Carpinus fangiana HOM05D003428 ORTHO05D004131 5.3e-220 768.1 703 61.7
Gohir.D06G153100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 7.0e-220 767.7 690 62.3
Carub.0002s0319 Capsella rubella HOM05D003428 ORTHO05D004131 1.6e-219 766.5 709 60.2
Sp2g02690 Schrenkiella parvula HOM05D003428 ORTHO05D004131 1.6e-219 766.5 709 60.1
Migut.M01297 Erythranthe guttata HOM05D003428 ORTHO05D004131 2.0e-219 766.1 706 61.2
AL2G14210 Arabidopsis lyrata HOM05D003428 ORTHO05D004131 2.7e-219 765.8 709 60.1
Psat4g063040 Pisum sativum HOM05D003428 ORTHO05D004131 2.7e-219 765.8 702 60.7
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 3.5e-219 765.4 782 57.2
SalBow3G0064 Salvia bowleyana HOM05D003428 ORTHO05D004131 7.7e-219 764.2 713 60.9
SalBow3G1270 Salvia bowleyana HOM05D003428 ORTHO05D004131 7.7e-219 764.2 713 60.9
AT1G61850 Arabidopsis thaliana HOM05D003428 ORTHO05D004131 1.7e-218 763.1 709 59.9
Medtr4g131850 Medicago truncatula HOM05D003428 ORTHO05D004131 8.5e-218 760.8 702 60.3
Ciclev10014053m.g Citrus clementina HOM05D003428 ORTHO05D004131 2.5e-217 759.2 714 60.9
vmacro15816 Vaccinium macrocarpon HOM05D003428 ORTHO05D004131 2.5e-217 759.2 708 61.9
Lsat_1_v5_gn_7_17340 Lactuca sativa HOM05D003428 ORTHO05D004131 5.5e-217 758.1 704 60.9
Sc17g0007210 Simmondsia chinensis HOM05D003428 ORTHO05D004131 5.5e-217 758.1 712 60.0
HanXRQChr15g0471381 Helianthus annuus HOM05D003428 ORTHO05D004131 1.6e-216 756.5 708 61.6
Aa31LG1G3130 Aethionema arabicum HOM05D003428 ORTHO05D004131 6.8e-215 751.1 714 59.4
Hund23486 Selenicereus undatus HOM05D003428 ORTHO05D004131 6.8e-215 751.1 708 60.2
Phvul.003G077100 Phaseolus vulgaris HOM05D003428 ORTHO05D004131 3.7e-213 745.3 698 60.3
arahy.Tifrunner.gnm1.ann1.YW42SM Arachis hypogaea HOM05D003428 ORTHO05D004131 8.3e-213 744.2 704 60.1
Ca_30202_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 1.1e-212 743.8 702 60.0
Oeu063903.1 Olea europaea HOM05D003428 ORTHO05D004131 1.1e-212 743.8 708 59.9
arahy.Tifrunner.gnm1.ann1.D341M5 Arachis hypogaea HOM05D003428 ORTHO05D004131 3.1e-212 742.3 703 60.0
AUR62012675 Chenopodium quinoa HOM05D003428 ORTHO05D004131 3.5e-211 738.8 712 58.7
AUR62021981 Chenopodium quinoa HOM05D003428 ORTHO05D004131 2.3e-210 736.1 712 58.6
Lj2C271T3 Lonicera japonica HOM05D003428 ORTHO05D004131 2.3e-210 736.1 696 60.9
CSS0004273 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 8.6e-210 734.2 708 60.0
CSS0019319 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 8.6e-210 734.2 708 60.0
Manes.17G037100 Manihot esculenta HOM05D003428 ORTHO05D004131 8.6e-210 734.2 708 59.2
Peaxi162Scf00262g00059 Petunia axillaris HOM05D003428 ORTHO05D004131 8.6e-210 734.2 708 59.7
arahy.Tifrunner.gnm1.ann1.IL23TX Arachis hypogaea HOM05D003428 ORTHO05D004131 3.3e-209 732.3 736 57.3
ECA248G3692 Erigeron canadensis HOM05D003428 ORTHO05D004131 3.3e-209 732.3 698 59.5
Solyc02g080340.3 Solanum lycopersicum HOM05D003428 ORTHO05D004131 3.0e-207 725.7 708 58.8
Sopen02g025040 Solanum pennellii HOM05D003428 ORTHO05D004131 1.7e-205 719.9 708 58.5
Ah.14g088090 Amaranthus hybridus HOM05D003428 ORTHO05D004131 3.7e-205 718.8 712 57.9
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 3.7e-205 718.8 708 59.0
arahy.Tifrunner.gnm1.ann1.FVAC65 Arachis hypogaea HOM05D003428 ORTHO05D004131 1.4e-204 716.8 736 56.7
HanXRQChr01g0003641 Helianthus annuus HOM05D003428 ORTHO05D004131 5.4e-204 714.9 705 57.3
VMungo1215G2587 Vigna mungo HOM05D003428 ORTHO05D004131 9.2e-204 714.1 707 58.3
arahy.Tifrunner.gnm1.ann1.0P9V0B Arachis hypogaea HOM05D003428 ORTHO05D004131 2.7e-203 712.6 745 56.1
FAN21G0107 Fragaria x ananassa HOM05D003428 ORTHO05D004131 5.9e-203 711.4 714 59.1
EL10Ac8g20020 Beta vulgaris HOM05D003428 ORTHO05D004131 2.3e-202 709.5 712 56.9
SGA_v2.0_scaffold7G03871 Striga asiatica HOM05D003428 ORTHO05D004131 3.8e-202 708.8 704 57.8
Ah.09g235070 Amaranthus hybridus HOM05D003428 ORTHO05D004131 7.3e-201 704.5 733 55.3
Gorai.011G015900 Gossypium raimondii HOM05D003428 ORTHO05D004131 7.3e-201 704.5 697 57.8
Gohir.D10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 6.1e-200 701.4 692 57.8
CsaV3_1G010910 Cucumis sativus L. HOM05D003428 ORTHO05D004131 3.1e-199 699.1 710 57.2
Gohir.A10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 4.0e-199 698.7 697 57.2
COL.COLO4_31743 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.3e-197 693.7 687 58.8
TWI38G0316 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 2.9e-197 692.6 686 57.4
Sed0007172 Sechium edule HOM05D003428 ORTHO05D004131 4.9e-197 691.8 708 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 9.2e-196 687.6 707 54.6
TWI38G0331 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 3.5e-195 685.6 705 56.2
THA.LOC104809511 Tarenaya hassleriana HOM05D003428 ORTHO05D004131 7.8e-195 684.5 707 56.2
CSS0033465 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 1.7e-194 683.3 708 56.4
PSO832G0075 Papaver somniferum HOM05D003428 ORTHO05D004131 1.1e-193 680.6 712 55.8
Aa31LG2G8980 Aethionema arabicum HOM05D003428 ORTHO05D004131 8.9e-191 671.0 710 55.1
Ca_21094_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 1.5e-190 670.2 702 55.1
Pp3c14_24720 Physcomitrium patens HOM05D003428 ORTHO05D004131 4.9e-189 665.2 717 52.6
Gohir.A05G168700 Gossypium hirsutum HOM05D003428 ORTHO05D004131 4.6e-187 658.7 623 58.4
PSO210G3795 Papaver somniferum HOM05D003428 ORTHO05D004131 5.1e-186 655.2 709 54.3
SMO367G0744 Selaginella moellendorffii HOM05D003428 ORTHO05D004131 3.9e-178 629.0 664 53.3
Atru.chr10.2177 Acer truncatum HOM05D003428 ORTHO05D004131 1.5e-177 627.1 442 77.4
Zm00001eb106120 Zea mays HOM05D003428 ORTHO05D004131 1.5e-177 627.1 507 67.9
Lj1A1228G69 Lonicera japonica HOM05D003428 ORTHO05D004131 4.3e-177 625.5 590 61.9
unitig_748.g7971 Utricularia gibba HOM05D003428 ORTHO05D004131 2.1e-176 623.2 712 52.7
DCAR_004205 Daucus carota HOM05D003428 ORTHO05D004131 2.0e-174 616.7 594 58.4
Cpa.g.sc198.25 Carica papaya HOM05D003428 ORTHO05D004131 3.2e-172 609.4 438 76.7
HPP92_017608 Vanilla planifolia HOM05D003428 ORTHO05D004131 3.2e-172 609.4 715 52.4
Hund21391 Selenicereus undatus HOM05D003428 ORTHO05D004131 4.2e-172 609.0 453 73.1
Lsat_1_v5_gn_1_124260 Lactuca sativa HOM05D003428 ORTHO05D004131 1.7e-170 603.6 612 56.2
Mapoly0096s0015 Marchantia polymorpha HOM05D003428 ORTHO05D004131 5.6e-169 598.6 738 49.3
Actinidia11848 Actinidia chinensis HOM05D003428 ORTHO05D004131 2.4e-167 593.2 580 59.5
Gohir.A09G069400 Gossypium hirsutum HOM05D003428 ORTHO05D004131 9.3e-156 554.7 590 53.7
Gohir.D09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.7e-155 553.1 590 53.4
Gorai.006G083500 Gossypium raimondii HOM05D003428 ORTHO05D004131 1.8e-154 550.4 590 53.2
Gorai.006G083400 Gossypium raimondii HOM05D003428 ORTHO05D004131 6.7e-146 521.9 579 52.7
Gohir.D09G069200 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.5e-145 520.8 579 52.7
Hma1.2p1_2687F.1_g326960 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 2.5e-145 520.0 384 76.3
Gohir.A09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 6.1e-123 445.7 505 51.5
CBR_g8995 Chara braunii HOM05D003428 ORTHO05D004131 9.4e-116 421.8 655 39.8
MCO07G720 Micromonas commoda HOM05D003428 ORTHO05D004131 3.7e-80 303.5 772 32.5
PSO302G0028 Papaver somniferum HOM05D003428 ORTHO05D004131 4.3e-76 290.0 233 67.4
Duzib192G1003 Durio zibethinus HOM05D003428 ORTHO05D004131 1.4e-63 248.4 200 70.0
PGSC0003DMG400002079 Solanum tuberosum HOM05D003428 ORTHO05D004131 4.1e-63 246.9 323 44.6
Hma1.2p1_3566F.1_g336820 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 4.7e-59 233.4 395 44.6
Cpa.g.c44049 Carica papaya HOM05D003428 ORTHO05D004131 2.4e-55 221.1 157 68.8
Duzib192G0559 Durio zibethinus HOM05D003428 ORTHO05D004131 3.2e-55 220.7 131 84.0
Atru.chr10.2178 Acer truncatum HOM05D003428 ORTHO05D004131 3.5e-54 217.2 166 64.5
Hma1.2p1_1622F.1_g294060 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 1.1e-50 205.7 161 64.0
Hma1.2p1_3566F.1_g336810 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 1.1e-50 205.7 161 64.0
Cre10.g425100 Chlamydomonas reinhardtii HOM05D003428 ORTHO05D004131 7.6e-49 199.5 421 32.5
Nn1g02123 Nelumbo nucifera HOM05D003428 ORTHO05D004131 5.6e-44 183.3 133 66.2
COL.COLO4_31763 Corchorus olitorius HOM05D001857 ORTHO05D004244 1.8e-42 178.3 297 45.1
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 3.4e-41 174.1 126 69.0
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 4.5e-41 173.7 118 72.9
Nn7g36944 Nelumbo nucifera HOM05D003428 ORTHO05D004131 5.4e-39 166.8 124 66.1
Duzib192G0759 Durio zibethinus HOM05D003428 ORTHO05D004131 3.7e-35 154.1 101 71.3
Lsat_1_v5_gn_8_26380 Lactuca sativa HOM05D003428 ORTHO05D004131 1.2e-30 139.0 157 48.4
Hund21392 Selenicereus undatus HOM05D003428 ORTHO05D004131 1.5e-25 122.1 113 51.3
Ah.06g186340 Amaranthus hybridus HOM05D003428 ORTHO05D004131 5.7e-20 103.6 437 29.5
MSTRG.13150 Avicennia marina HOM05D003428 ORTHO05D004131 2.0e-17 95.1 58 77.6
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 2.6e-17 94.7 319 31.7
MBI03_g15604_MAGBIO Magnolia biondii HOM05D003428 ORTHO05D013129 5.9e-17 93.6 68 72.1
CBR_g8997 Chara braunii HOM05D003428 ORTHO05D004131 2.2e-16 91.7 80 61.2
COL.COLO4_11116 Corchorus olitorius HOM05D003428 ORTHO05D003450 4.2e-15 87.4 46 87.0
SalBow1G4682 Salvia bowleyana HOM05D003428 ORTHO05D004131 5.5e-15 87.0 64 73.4
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 7.2e-15 86.7 52 76.9
COL.COLO4_14590 Corchorus olitorius HOM05D003428 ORTHO05D004131 9.4e-15 86.3 78 55.1
COL.COLO4_14750 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.6e-14 85.5 48 79.2
COL.COLO4_34792 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.6e-14 85.5 46 84.8
COL.COLO4_21035 Corchorus olitorius HOM05D002794 ORTHO05D003763 2.7e-14 84.7 48 79.2
COL.COLO4_11467 Corchorus olitorius HOM05D003428 ORTHO05D000332 4.6e-14 84.0 45 84.4
COL.COLO4_18253 Corchorus olitorius HOM05D003428 ORTHO05D004131 5.1e-13 80.5 46 80.4
COL.COLO4_31449 Corchorus olitorius HOM05D001315 ORTHO05D001618 1.1e-12 79.3 46 82.6
COL.COLO4_07719 Corchorus olitorius HOM05D003428 ORTHO05D004131 2.0e-12 78.6 51 74.5
MCO16G372 Micromonas commoda HOM05D003428 ORTHO05D004131 2.8e-11 74.7 78 46.2
MCO05G170 Micromonas commoda HOM05D003428 ORTHO05D268702 6.3e-11 73.6 189 27.5
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.2e-09 69.3 36 91.7
COL.COLO4_14509 Corchorus olitorius HOM05D000744 ORTHO05D000332 4.5e-09 67.4 36 88.9
Lsat_1_v5_gn_7_43500 Lactuca sativa HOM05D003428 ORTHO05D004131 5.9e-09 67.0 41 80.5
COL.COLO4_18353 Corchorus olitorius HOM05D002564 ORTHO05D004131 1.7e-08 65.5 50 68.0
Pp3c4_1850 Physcomitrium patens HOM05D000369 ORTHO05D002100 1.7e-08 65.5 174 31.0
Lj1A1228T72 Lonicera japonica HOM05D003428 ORTHO05D004131 3.8e-08 64.3 49 59.2
Cfa025253 Carpinus fangiana HOM05D003428 ORTHO05D121975 1.9e-07 62.0 86 37.2
COL.COLO4_18537 Corchorus olitorius HOM05D003428 ORTHO05D004131 2.5e-07 61.6 35 80.0
COL.COLO4_09520 Corchorus olitorius HOM05D003428 ORTHO05D004131 2.7e-06 58.2 35 82.9
Mapoly0001s0512 Marchantia polymorpha HOM05D000369 ORTHO05D002100 7.9e-06 56.6 167 29.9


User provided reference genes

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