Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.6e-200 702.6 356 100.0
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 9.5e-190 666.8 356 95.2
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.2e-147 526.9 352 76.4
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 9.3e-145 517.3 353 75.9
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 2.1e-141 506.1 353 73.9
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 4.8e-141 505.0 359 73.0
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 6.2e-141 504.6 360 73.6
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.3e-140 501.5 357 71.7
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 5.3e-140 501.5 339 74.9
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 9.0e-140 500.7 337 75.7
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.2e-139 500.4 319 79.3
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 1.5e-139 500.0 352 73.9
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 5.8e-139 498.0 356 72.2
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 7.6e-139 497.7 341 74.8
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 6.4e-138 494.6 343 71.7
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.1e-137 493.8 355 72.4
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.1e-137 493.8 355 72.7
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.1e-137 493.8 355 72.7
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.9e-137 493.0 355 72.4
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.9e-137 493.0 333 75.1
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 3.2e-137 492.3 355 72.4
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 4.2e-137 491.9 361 69.3
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 4.2e-137 491.9 340 74.1
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 5.4e-137 491.5 339 74.6
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.2e-136 490.3 345 72.5
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.6e-136 490.0 355 71.3
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.1e-136 489.6 358 70.9
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 2.1e-136 489.6 354 70.9
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 3.5e-136 488.8 294 82.0
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 3.5e-136 488.8 349 72.2
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 3.5e-136 488.8 359 70.8
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 6.0e-136 488.0 311 78.1
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 7.9e-136 487.6 349 71.9
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 7.9e-136 487.6 357 71.1
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 7.9e-136 487.6 350 72.0
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 1.3e-135 486.9 361 71.7
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 2.3e-135 486.1 354 71.8
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 3.9e-135 485.3 345 73.0
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 8.7e-135 484.2 348 72.4
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 8.7e-135 484.2 355 70.4
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.1e-134 483.8 316 76.6
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 1.9e-134 483.0 301 78.1
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.9e-134 483.0 353 70.5
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 2.5e-134 482.6 348 71.6
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 2.5e-134 482.6 325 74.8
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 9.6e-134 480.7 351 71.8
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.6e-133 479.9 329 74.8
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 2.1e-133 479.6 339 71.4
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 3.7e-133 478.8 325 73.8
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 6.2e-133 478.0 349 71.1
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 8.1e-133 477.6 360 67.8
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 8.1e-133 477.6 355 69.6
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 8.1e-133 477.6 358 68.7
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.1e-132 477.2 332 72.6
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.1e-132 477.2 353 70.0
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 3.1e-132 475.7 349 69.9
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 5.3e-132 474.9 344 70.3
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 6.9e-132 474.6 294 79.3
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 9.0e-132 474.2 355 69.0
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 9.0e-132 474.2 345 71.0
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.2e-131 473.8 357 68.3
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.2e-131 473.8 349 71.6
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 1.5e-131 473.4 345 70.7
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 2.6e-131 472.6 333 72.1
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 3.4e-131 472.2 307 76.5
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 3.4e-131 472.2 331 72.2
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 4.5e-131 471.9 316 75.0
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 4.5e-131 471.9 356 68.8
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 5.8e-131 471.5 350 69.4
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 5.8e-131 471.5 317 75.4
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 7.6e-131 471.1 343 71.4
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 1.0e-130 470.7 341 70.7
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.0e-130 470.7 341 71.0
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 2.2e-130 469.5 322 73.0
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 2.9e-130 469.2 341 70.7
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.8e-130 468.8 375 66.4
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 4.9e-130 468.4 324 71.3
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 4.9e-130 468.4 375 66.1
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-128 463.8 370 67.3
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.2e-128 463.8 344 69.2
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.6e-128 463.4 346 69.7
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 2.7e-128 462.6 345 68.7
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 2.7e-128 462.6 300 76.0
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 3.0e-127 459.1 311 74.6
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 6.7e-127 458.0 364 65.7
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 2.1e-125 453.0 301 73.4
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 2.1e-125 453.0 353 67.1
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.8e-125 452.6 284 79.6
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 6.2e-125 451.4 346 68.5
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 8.2e-125 451.1 338 68.0
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.8e-124 449.9 303 73.9
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 2.4e-124 449.5 312 71.8
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 3.1e-124 449.1 360 66.1
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 4.1e-124 448.7 324 71.0
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 6.9e-124 448.0 338 69.5
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 6.9e-124 448.0 357 65.3
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 9.0e-124 447.6 311 74.0
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 7.6e-123 444.5 284 76.8
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 7.6e-123 444.5 333 70.0
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.7e-122 443.4 345 67.5
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 6.5e-122 441.4 338 68.3
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 1.9e-121 439.9 339 64.6
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.0e-119 434.1 359 60.2
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 5.1e-119 431.8 352 66.2
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 5.1e-119 431.8 352 66.2
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 6.7e-119 431.4 315 69.8
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 6.7e-119 431.4 345 66.4
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.9e-118 429.9 342 62.0
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 2.5e-118 429.5 338 67.5
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 3.3e-118 429.1 338 67.2
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 4.3e-118 428.7 353 65.7
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 4.3e-118 428.7 320 70.0
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 7.4e-118 427.9 351 65.2
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 7.4e-118 427.9 336 68.2
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.4e-118 427.9 344 65.4
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 9.7e-118 427.6 338 67.2
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.6e-117 426.8 352 65.6
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 2.2e-117 426.4 315 64.1
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.8e-117 426.0 350 64.6
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 3.7e-117 425.6 321 69.5
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.1e-116 424.1 322 68.0
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 5.3e-116 421.8 326 68.4
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 2.6e-115 419.5 322 68.6
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 4.5e-115 418.7 334 66.2
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 4.5e-115 418.7 334 66.2
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 4.5e-115 418.7 334 66.2
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 3.8e-114 415.6 334 65.9
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 2.5e-113 412.9 333 66.4
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 7.9e-112 407.9 341 64.2
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 9.7e-110 401.0 333 61.0
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.8e-108 396.7 282 71.6
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 3.1e-108 396.0 367 60.2
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 2.8e-101 372.9 335 61.5
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 3.7e-101 372.5 265 71.3
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 2.6e-99 366.3 465 48.0
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 4.8e-93 345.5 321 54.8
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 4.1e-92 342.4 277 67.1
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 1.3e-90 337.4 261 65.5
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 5.0e-90 335.5 307 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 8.0e-88 328.2 313 55.6
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.7e-85 320.5 355 47.6
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 8.3e-85 318.2 187 81.3
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 5.4e-84 315.5 271 56.8
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 2.9e-82 309.7 323 52.0
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 3.8e-82 309.3 215 73.0
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 4.2e-81 305.8 194 77.3
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.5e-78 297.4 197 75.1
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-75 287.7 222 67.1
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.6e-75 287.3 214 67.3
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 2.9e-74 283.1 179 75.4
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 4.4e-70 269.2 277 54.5
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 4.1e-68 262.7 292 47.9
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 4.0e-47 193.0 163 62.6
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 5.8e-46 189.1 137 71.5
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 7.1e-44 182.2 121 69.4
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 2.7e-43 180.3 124 75.8
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 2.3e-42 177.2 128 71.1
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 3.2e-36 156.8 89 82.0
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 1.6e-35 154.5 108 71.3
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 7.9e-27 125.6 268 29.1
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.1e-25 121.7 92 59.8
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 3.2e-20 103.6 261 29.9
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 5.3e-07 59.7 37 83.8


User provided reference genes

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